View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_235 (Length: 255)
Name: NF1345_low_235
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_235 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 38218395 - 38218180
Alignment:
| Q |
25 |
cctaactcctaagttagttgagtcaaagatgatctatgtttagactttagataccttgcattattatcaattatgggcgacaattacaactaactatttt |
124 |
Q |
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| T |
38218395 |
cctaactcctaagttagttgagtcaaagatgatctatgtttagactttagataccttgcattattatcaattatgggcgacaattacaactaactatttt |
38218296 |
T |
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| Q |
125 |
ggttaaataagagaagagaatatacaggtgaagacaatagaagagaaagacaacaatgcgcgcgattccagtttccacgcaagctttcctacttcctcaa |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218295 |
ggttaaataagagaagagaatatacaggtgaagacaatagaagagaaagacaacaatgcgcgcgattccagtttccacgcaagctttcctacttcctcaa |
38218196 |
T |
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| Q |
225 |
ccacattcctcccttt |
240 |
Q |
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|||||||||||||||| |
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| T |
38218195 |
ccacattcctcccttt |
38218180 |
T |
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