View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_238 (Length: 253)
Name: NF1345_low_238
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_238 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27633812 - 27634049
Alignment:
| Q |
1 |
taatcaatctattctataaaatacatccaagaagaacaaaattgatatatcatacagaacatatagtaatcacacacatacataaatattattaaaatca |
100 |
Q |
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| T |
27633812 |
taatcaatctattctataaaatacatccaagaagaacaaaattgatatatcatacagaacata--gtaatcacacacattcataaatattattaaaatca |
27633909 |
T |
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| Q |
101 |
aatataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaacttcattcatcatgcgaatatcgaaaacaggaatatcttgtgacacctcagt |
200 |
Q |
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| T |
27633910 |
aatataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaacctcattcatcatgcgaatatcgaaaacaggaatatcttgtgacacctcagt |
27634009 |
T |
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| Q |
201 |
aggtgttgttgaagatgaagctccaatgttgttgtcctct |
240 |
Q |
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| T |
27634010 |
aggtgttgttgaagatgaagctccaatgttgttttcctct |
27634049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34518630 - 34518867
Alignment:
| Q |
1 |
taatcaatctattctataaaatacatccaagaagaacaaaattgatatatcatacagaacatatagtaatcacacacatacataaatattattaaaatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
34518630 |
taatcaatctattctataaaatacatccaagaagaacaaaattgatatatcatacagaacata--gtaatcacacacatgcataaatattattaaaatca |
34518727 |
T |
|
| Q |
101 |
aatataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaacttcattcatcatgcgaatatcgaaaacaggaatatcttgtgacacctcagt |
200 |
Q |
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| T |
34518728 |
aatataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaactttattcatcatgcgaatatcaaaaacaggaatatcttgtgacacctcagt |
34518827 |
T |
|
| Q |
201 |
aggtgttgttgaagatgaagctccaatgttgttgtcctct |
240 |
Q |
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| T |
34518828 |
aggtgttgttgaagatgaagctccaatgttgttgtcctct |
34518867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 161
Target Start/End: Original strand, 34527707 - 34527799
Alignment:
| Q |
70 |
tcacacacatacataaatattattaaaatcaaat-ataaaaaacaacctttctcatccaccgaaatactgtgatcgtcaacttcattcatcat |
161 |
Q |
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||||||||||| | ||| |||||||||||||||| | |||||||||||||||||||| | |||||||||||||| ||||| |||||| |||| |
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| T |
34527707 |
tcacacacataaagaaagattattaaaatcaaattaaaaaaaacaacctttctcatctccagaaatactgtgatcatcaacctcattcgtcat |
34527799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34527605 - 34527656
Alignment:
| Q |
1 |
taatcaatctattctataaaatacatccaagaagaacaaaattgatatatca |
52 |
Q |
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|||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
34527605 |
taatcaatctcttcaataaaatacatccaagaagaataaaattgatatatca |
34527656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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