View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_241 (Length: 252)
Name: NF1345_low_241
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_241 |
 | |
|
| [»] chr1 (9 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 32 - 252
Target Start/End: Original strand, 27215003 - 27215223
Alignment:
| Q |
32 |
atgttcccaggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcacatcgtaga |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27215003 |
atgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcacatcataga |
27215102 |
T |
|
| Q |
132 |
aatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27215103 |
aatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccattgcaaccgagttgaccagaggcacaatcggc |
27215202 |
T |
|
| Q |
232 |
agtggcacagctgaactttcc |
252 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27215203 |
ggtggcacagctgaactttcc |
27215223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 32 - 252
Target Start/End: Complemental strand, 27443898 - 27443678
Alignment:
| Q |
32 |
atgttcccaggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcacatcgtaga |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27443898 |
atgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcacatcttaga |
27443799 |
T |
|
| Q |
132 |
aatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27443798 |
aatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccattgcaaccgagttgaccagaggcacaatcggc |
27443699 |
T |
|
| Q |
232 |
agtggcacagctgaactttcc |
252 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27443698 |
ggtggcacagctgaactttcc |
27443678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 32 - 252
Target Start/End: Original strand, 27432712 - 27432932
Alignment:
| Q |
32 |
atgttcccaggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcacatcgtaga |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27432712 |
atgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcacatcataga |
27432811 |
T |
|
| Q |
132 |
aatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
27432812 |
aatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttacaaccgacttgaccagaggcacaatcggc |
27432911 |
T |
|
| Q |
232 |
agtggcacagctgaactttcc |
252 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
27432912 |
ggtggcacaactgaactttcc |
27432932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 32 - 252
Target Start/End: Original strand, 27220965 - 27221185
Alignment:
| Q |
32 |
atgttcccaggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcacatcgtaga |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27220965 |
atgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccgtccacattgctcacatcgtaga |
27221064 |
T |
|
| Q |
132 |
aatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggc |
231 |
Q |
| |
|
| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27221065 |
agtcttgtcccccgtctgttgctaccgttatttctaccaatgttgctggtgggattgccccagcaccgttgcaaccgacttgaccagaggcacaatcggc |
27221164 |
T |
|
| Q |
232 |
agtggcacagctgaactttcc |
252 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
27221165 |
ggtggcacagctgaactttcc |
27221185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 32 - 252
Target Start/End: Original strand, 27207632 - 27207852
Alignment:
| Q |
32 |
atgttcccaggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcacatcgtaga |
131 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
27207632 |
atgttcctaggacaactagcggttttgcagtcaccactcccaccttgtggcattacggacatgggcacattgaacccatcaacattgctcacatcgtaga |
27207731 |
T |
|
| Q |
132 |
aatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggc |
231 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
27207732 |
aatcttgtcccccgttggatgctattgttatttctaccagtgttgctggtgggattgcgccagcaccgttgcaaccgacttgaccggaggcacaatcggc |
27207831 |
T |
|
| Q |
232 |
agtggcacagctgaactttcc |
252 |
Q |
| |
|
||||| ||||||||| |||| |
|
|
| T |
27207832 |
ggtggcgcagctgaaccttcc |
27207852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 27388935 - 27389134
Alignment:
| Q |
41 |
ggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcacatcgtagaaatcttgtc |
140 |
Q |
| |
|
||||| || |||| |||||| || ||||| || |||||||| ||||| ||||||||||||||||| || || || ||||||||||||||||||||||||| |
|
|
| T |
27388935 |
ggacagctagaggatttgcaatcgccacttccgccttgtggagttacggacattggcacgttgaaaccgtcaacgttgctcacatcgtagaaatcttgtc |
27389034 |
T |
|
| Q |
141 |
ccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcaca |
240 |
Q |
| |
|
| || |||| ||| || || ||||| ||||| |||||||||||||||||||||||||| ||||| | | ||||||||| |||||||||||||||||||| |
|
|
| T |
27389035 |
ctccatttgatgccactgtaatttcaaccaaagttgctggtgggattgcgccagcaccattgcatgcaacttgaccagatgcacaatcggcagtggcaca |
27389134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 69 - 250
Target Start/End: Original strand, 27409919 - 27410100
Alignment:
| Q |
69 |
tcccaccttgtggcgttacagacattggcacgttgaatccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctac |
168 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||||| || || || |||||||||||||||||||||||||| || |||| ||| | ||| ||||| || |
|
|
| T |
27409919 |
tcccaccttgtggagttacaaaaattggcacgttgaacccgtcaacgttgctcacatcgtagaaatcttgtcctccatttgatgccatggtaatttcaac |
27410018 |
T |
|
| Q |
169 |
caatgttgctggtgggattgcgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggcacagctgaacttt |
250 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||| || | ||||||||| |||||||||| |||||||| || |||||| |
|
|
| T |
27410019 |
taaagttgctggtgggattgcgccagcaccattgcaccccacttgaccagacccacaatcggctgtggcacaactaaacttt |
27410100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 27454712 - 27454834
Alignment:
| Q |
115 |
attgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattgcgccagcaccgttgcaaccgagttga |
214 |
Q |
| |
|
|||||||||||| ||||||||||||| || || || || || |||||||||||||||||||||||||||||||| || ||| | ||| |||| | |||| |
|
|
| T |
27454712 |
attgctcacatcatagaaatcttgtctcctgtctgatgtaaccgttatttctaccaatgttgctggtgggattgcacctgcatcattggaacccatttga |
27454811 |
T |
|
| Q |
215 |
ccagaggcacaatcggcagtggc |
237 |
Q |
| |
|
|| ||| ||||||||||||||| |
|
|
| T |
27454812 |
ccggagatacaatcggcagtggc |
27454834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 20952648 - 20952716
Alignment:
| Q |
77 |
tgtggcgttacagacattggcacgttgaatccatccacattgctcacatcgtagaaatcttgtcccccg |
145 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| | ||||||||||||||||| || ||||||||||||||| |
|
|
| T |
20952648 |
tgtggcgttattgacattgacacattgaacctgtccacattgctcacatcatataaatcttgtcccccg |
20952716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 41457895 - 41457747
Alignment:
| Q |
89 |
gacattggcacgttgaatccatccacattgctcacatcgtagaaatcttgtcccccgtttgttgctacggttatttctaccaatgttgctggtgggattg |
188 |
Q |
| |
|
||||| || |||||||| || || |||||||| | ||||||| | |||||||| ||||| | | ||||| || |||| | |||||||||||||| | || |
|
|
| T |
41457895 |
gacatgggtacgttgaacccgtcaacattgcttatatcgtagtagtcttgtccaccgttggcttctacgtgtagttctgctaatgttgctggtggaactg |
41457796 |
T |
|
| Q |
189 |
cgccagcaccgttgcaaccgagttgaccagaggcacaatcggcagtggc |
237 |
Q |
| |
|
| || ||||| |||||| ||| ||| || ||| ||||||| |||||||| |
|
|
| T |
41457795 |
caccggcaccattgcaagcgacttggccggagccacaatcagcagtggc |
41457747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University