View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_243 (Length: 252)
Name: NF1345_low_243
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_243 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 47619072 - 47619176
Alignment:
| Q |
1 |
cagcttgagcccagtgccttaatttggtttttataagtgctggatcatcccctgcaaccacattaatcaattcaccaaattaataacaactaattacggg |
100 |
Q |
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| T |
47619072 |
cagcttgagcccagtgccttaatttggtttttataagtgctggatcatcccctgcaaccacattaatcaattcaccaaattaataacaactaattacggg |
47619171 |
T |
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| Q |
101 |
ctaaa |
105 |
Q |
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||||| |
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| T |
47619172 |
ctaaa |
47619176 |
T |
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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 47619205 - 47619268
Alignment:
| Q |
104 |
aatatacaataaacacaaccgaatactttgaaacatttatacacaaattaaacacgttagagta |
167 |
Q |
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| T |
47619205 |
aatatacaataaacacaaccgaatactttgaaacatttatacacaaattaaacacattagagta |
47619268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 225
Target Start/End: Original strand, 47619271 - 47619305
Alignment:
| Q |
191 |
aaacgatacttataattagtgatgaattatatctg |
225 |
Q |
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| T |
47619271 |
aaacgatacttataattactgatgaattatatctg |
47619305 |
T |
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