View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_245 (Length: 252)
Name: NF1345_low_245
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_245 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 31 - 237
Target Start/End: Original strand, 46106056 - 46106262
Alignment:
| Q |
31 |
aaatcacttctttcggaaaattagaaacagtggaagagaacaagaaacgtcacaaacccaacaatcaagttaccgcaaattaacactcatccgccatcgt |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||||| ||||||||||||| |
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| T |
46106056 |
aaatcacttctttcggaaaattagaaacagtggaagagaacaagaaacatcacaaacccagctatcaagtcaccgcaaattaacacccatccgccatcgt |
46106155 |
T |
|
| Q |
131 |
cctcgtcgcgctaccatagcaccaccgtcatcaccgccggtgtcccattcaccaaccactaaatcttccatcgtcggcgacggccacaacgtggctgttc |
230 |
Q |
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||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46106156 |
cctcgtcgcgctaccatggcaccaccgtcatcaccaccagtgtcccgttcaccaaccactaaatcttccatcgtcggcgacggccacaacgtggctgttc |
46106255 |
T |
|
| Q |
231 |
tcactct |
237 |
Q |
| |
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||||||| |
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|
| T |
46106256 |
tcactct |
46106262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 48033809 - 48033767
Alignment:
| Q |
102 |
accgcaaattaacactcatccgccatcgtcctcgtcgcgctac |
144 |
Q |
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| T |
48033809 |
accgcaaattaaaactcctccgccaccgtcctcgtcgcgctac |
48033767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 29 - 246
Target Start/End: Complemental strand, 12049053 - 12048836
Alignment:
| Q |
29 |
aaaaatcacttctttcggaaaattagaaacagtggaagagaacaagaaacgtcacaaacccaacaatcaagttaccgcaaattaacactcatccgccatc |
128 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| |
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| T |
12049053 |
aaaaatcacttctttcagaaaattataaacagtggaagagaacaagaaacgtcacaaacccagctatcaagtcaccgcaaattaacactcatccgccatc |
12048954 |
T |
|
| Q |
129 |
gtcctcgtcgcgctaccatagcaccaccgtcatcaccgccggtgtcccattcaccaaccactaaatcttccatcgtcggcgacggccacaacgtggctgt |
228 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
12048953 |
gtcctcgtcgcgctaccatggcaccaccgtcatcaccatcggtgtccgggtcaccaaccactaaatcttccatcgtcggcgacagccacaacctggctgt |
12048854 |
T |
|
| Q |
229 |
tctcactcttcatctcac |
246 |
Q |
| |
|
||||||||| | |||||| |
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|
| T |
12048853 |
tctcactctccttctcac |
12048836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 1973066 - 1972979
Alignment:
| Q |
150 |
caccaccgtcatcaccgccggtgtcccattcaccaaccactaaatcttccatcgtcggcgacggccacaacgtggctgttctcactct |
237 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||| |||||| |||||| || |||| ||||||| |||| |||||||||||| |
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| T |
1973066 |
caccaccgtcatcaccgccggcgtccggttcaccaaccaccaaatctgccatcgccgacgacagccacaaagtggttgttctcactct |
1972979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 20897042 - 20897101
Alignment:
| Q |
31 |
aaatcacttctttcggaaaattagaaacagtggaagagaacaagaaacgtcacaaaccca |
90 |
Q |
| |
|
||||||||||||||| ||||||||| ||| || ||||||||||||||||||||||||||| |
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|
| T |
20897042 |
aaatcacttctttcgaaaaattagagacaatgaaagagaacaagaaacgtcacaaaccca |
20897101 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 94 - 246
Target Start/End: Original strand, 48333464 - 48333618
Alignment:
| Q |
94 |
atcaagttaccgcaaattaa-cactcatccgccatcgtcctcgtcgcgctaccata-gcaccaccgtcatcaccgccggtgtcccattcaccaaccacta |
191 |
Q |
| |
|
||||||| ||||||| |||| |||| ||||||||| | |||| |||||||||||| |||||||||||||||||||| | |||| |||||||||||| | |
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| T |
48333464 |
atcaagtcaccgcaacttaaacacttatccgccattgacctcatcgcgctaccatgtgcaccaccgtcatcaccgccagcgtccggttcaccaaccacca |
48333563 |
T |
|
| Q |
192 |
aatcttccatcgtcggcgacggccacaacgtggctgttctcactcttcatctcac |
246 |
Q |
| |
|
||||| ||||||||| |||| ||||||| ||||||||||||||||| | |||||| |
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|
| T |
48333564 |
aatctgccatcgtcgacgacagccacaaagtggctgttctcactctccttctcac |
48333618 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 20723271 - 20723384
Alignment:
| Q |
122 |
cgccatcgtcctcgtcgcgctaccata-gcaccaccgtcatcaccgccggtgtcccattcaccaaccactaaatcttccatcgtcggcgacggccacaac |
220 |
Q |
| |
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|||||||| |||||||||||||| || |||||||||||||||||||||| ||||| |||||||||||| |||||| |||||| |||| || |||||||| |
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| T |
20723271 |
cgccatcgacctcgtcgcgctacgatgtgcaccaccgtcatcaccgccggcgtcccgttcaccaaccaccaaatctgccatcgccggcaacagccacaac |
20723370 |
T |
|
| Q |
221 |
gtggctgttctcac |
234 |
Q |
| |
|
|||||||||||||| |
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|
| T |
20723371 |
gtggctgttctcac |
20723384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 246
Target Start/End: Original strand, 26864663 - 26864861
Alignment:
| Q |
31 |
aaatcacttctttcggaaaattagaaacagtggaagagaacaagaaacgtcacaaacccaacaatcaagttaccgcaaattaacactcatccgccatcgt |
130 |
Q |
| |
|
||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
26864663 |
aaatcacttctttcgaaaaattagaaacaatgaaagagaacaagaaacgtcacaaacccagttatcaagt-----------------catc-gccatcga |
26864744 |
T |
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| Q |
131 |
cctcgtcgcgctaccata-gcaccaccgtcatcaccgccggtgtcccattcaccaaccactaaatcttccatcgtcggcgacggccacaacgtggctgtt |
229 |
Q |
| |
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|||||||||||||| || | ||||| |||||||||||||| ||||| |||||||||||| |||||| |||||| || |||||||||||||||||||||| |
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| T |
26864745 |
cctcgtcgcgctacgatgtgtaccacagtcatcaccgccggcgtcccgttcaccaaccaccaaatctgccatcgccgacgacggccacaacgtggctgtt |
26864844 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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