View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_246 (Length: 252)
Name: NF1345_low_246
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_246 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 50385340 - 50385559
Alignment:
| Q |
26 |
gctttggttgatccttcaccagtgaaaatagtaacagaaggtgaaactgtaactgaaacagaaaacatcaactctgctctttcagtttcagctccnnnnn |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
50385340 |
gctttggttgatccttcaccagtgaaaatagtaacagaaggtgaaacagtaactgaaacagaaaaggtcaactctgctgtttcagtttcagctccaaaaa |
50385439 |
T |
|
| Q |
126 |
nngatccaaaatggtgggaagatgtgttcagtccaccagcaagaggtgaggattatacaatacttcaagcacttttcagcatagacatgttgatactatt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50385440 |
aagatccaaaatggtgggaagatgtgttcaatccaccagcaagaggtgaggattatacaatacttcaagcacttttcagcatggacatgttgatactatt |
50385539 |
T |
|
| Q |
226 |
tgtggcatgtatctgtggtg |
245 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
50385540 |
tgtggcatgtatttgtggtg |
50385559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 26 - 245
Target Start/End: Original strand, 50393759 - 50393978
Alignment:
| Q |
26 |
gctttggttgatccttcaccagtgaaaatagtaacagaaggtgaaactgtaactgaaacagaaaacatcaactctgctctttcagtttcagctccnnnnn |
125 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
50393759 |
gctttggtagatccttcaccagtgaaaatagtaacagaaggtgaaacagtaactgaaacagaaaaggtcaactctgctgtttcagtttcagctccaaaaa |
50393858 |
T |
|
| Q |
126 |
nngatccaaaatggtgggaagatgtgttcagtccaccagcaagaggtgaggattatacaatacttcaagcacttttcagcatagacatgttgatactatt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50393859 |
aagatccaaaatggtgggaagatgtgttcaatccaccagcaagaggtgaggattatacaatacttcaagcacttttcagcatggacatgttgatactatt |
50393958 |
T |
|
| Q |
226 |
tgtggcatgtatctgtggtg |
245 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
50393959 |
tgtggcatgtatttgtggtg |
50393978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 26 - 244
Target Start/End: Original strand, 50390485 - 50390703
Alignment:
| Q |
26 |
gctttggttgatccttcaccagtgaaaatagtaacagaaggtgaaactgtaactgaaacagaaaacatcaactctgctctttcagtttcagctccnnnnn |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| || |
|
|
| T |
50390485 |
gctttggttgatccttcaccagtgaaaatagtaacagaaggtgaaacagtaactgaaacagaaaaggtcaactctgctgtttcagtttcagtcccaaaaa |
50390584 |
T |
|
| Q |
126 |
nngatccaaaatggtgggaagatgtgttcagtccaccagcaagaggtgaggattatacaatacttcaagcacttttcagcatagacatgttgatactatt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50390585 |
aagatccaaaatggtgggaagatgtgttcaatccaccagcaagaggtgaggattatacgatacttcaagcacttttcagcatagacatgttgatactatt |
50390684 |
T |
|
| Q |
226 |
tgtggcatgtatctgtggt |
244 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
50390685 |
tgtggcatgtatttgtggt |
50390703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University