View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_249 (Length: 251)
Name: NF1345_low_249
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_249 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 43198133 - 43198381
Alignment:
| Q |
1 |
ccttcaatcttgcttaaggagtgctatcctagaacttaaaatatgatacaaccaatattacaataaaagaacgaaaacaacaaaagaaacacaagctatg |
100 |
Q |
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| T |
43198133 |
ccttcaatcttgcttaaggagagctagcctagaactcaaaatatgatacaaccaatattacaataaaagaacgaaaacaacaaaagaaacacaagctatg |
43198232 |
T |
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| Q |
101 |
taacatgaatacaataacgaagtggatttatttaccattgatgaaaatcaaaagataaataattgcccttcactttcatccaccataaaagagaagagtt |
200 |
Q |
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| T |
43198233 |
taacatgaatacaataacgaagtggatttatttaccattgatgaaaatcaaaagataaataattgcccttcactttcatccaccataaaagagaagagtt |
43198332 |
T |
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| Q |
201 |
tgactttatcgaataattgttgaatagacatctcatattattggacatg |
249 |
Q |
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|||||||||||||||||||||||||||||||||| | || ||||||||| |
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| T |
43198333 |
tgactttatcgaataattgttgaatagacatctccttttgttggacatg |
43198381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 43198412 - 43198457
Alignment:
| Q |
189 |
aagagaagagtttgactttatcgaataattgttgaatagacatctc |
234 |
Q |
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| T |
43198412 |
aagagaagagtttgactttatcgaataattatggaatagacatctc |
43198457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 231
Target Start/End: Complemental strand, 19125826 - 19125686
Alignment:
| Q |
90 |
cacaagctatgtaacatgaatacaataacgaagtggatttatttaccattgatgaaaatcaaaagataaataattgcccttcactttcatccaccataaa |
189 |
Q |
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| T |
19125826 |
cacaagctaaataacatgaattcaacaatgaagtggatttatccactattgatgaaaataaaaatctaagtaattgtctttcactttcagtca-caagaa |
19125728 |
T |
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| Q |
190 |
agagaagagtttgactttatcgaataattgttgaatagacat |
231 |
Q |
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| T |
19125727 |
agataagagtataactttatcgaataattactaaatagacat |
19125686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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