View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_250 (Length: 251)
Name: NF1345_low_250
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_250 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 16620440 - 16620670
Alignment:
| Q |
18 |
aaaattaacaaagattatatagaacatgaattaatcaatgattgaatttcatagctagaaaaataaattagttattgcaactgcttgaaaattttgattt |
117 |
Q |
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| T |
16620440 |
aaaatgaacaaagattatatagaacatgaattaatcaatgattgaatttcatatctagaaaaataaattagttattgtaactgcatgaaaattttgattt |
16620539 |
T |
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| Q |
118 |
tacatgattacaacaaaattgaaaaaacatgcaatgcaatagttcacatataaacatagtcaatgatgaatcaagaagaacaagaacatgtatcaagaat |
217 |
Q |
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| T |
16620540 |
tacatgattacaa---aattgaaaaaacatgcaatgcaatagttcacatataaacatagtcaatgatgaatcaagaagaacaagaacatgtatcaagaat |
16620636 |
T |
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| Q |
218 |
ccataaaacagagttgttaagaacgaaatatacc |
251 |
Q |
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| T |
16620637 |
ccataaaacagacttgttaagaacgaaatatacc |
16620670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 37 - 251
Target Start/End: Original strand, 4794169 - 4794383
Alignment:
| Q |
37 |
tagaacatgaattaatcaatgattgaatttcatagctagaaaaataaattagttattgcaactgcttgaaaattttgattttacatgattacaacaaaat |
136 |
Q |
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| T |
4794169 |
tagaacaagaattaatcaatgattcaatttcatacctagaaaaataaattatttattgtaaccgcgcgaaaattttgattttacatgattacaa---aat |
4794265 |
T |
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| Q |
137 |
tgaaaaaacatgcaatgcaata---gttcacatataaacatagtcaatgatgaatcaagaagaacaagaacatgtatcaagaatccataaaacagagttg |
233 |
Q |
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| T |
4794266 |
tggcaaaacatgcaatgcaatattagttcatgtataaacatagtcaatgatgaatcaagaagaacaagaacatgtatcaagaatccataaaatagactta |
4794365 |
T |
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| Q |
234 |
ttaagaacgaaatatacc |
251 |
Q |
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| T |
4794366 |
ttaagaacgaaatatacc |
4794383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 38881493 - 38881569
Alignment:
| Q |
145 |
catgcaatgcaatagttcacatataaacatagtcaatgatgaatcaagaagaacaagaacatgtatcaagaatccat |
221 |
Q |
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| T |
38881493 |
catgcaatgcatcaattcacatataaacaaactcaatgatcaatcaagaacaacaagaacaagtatcaagaatccat |
38881569 |
T |
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