View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_253 (Length: 251)
Name: NF1345_low_253
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_253 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 34966775 - 34966687
Alignment:
| Q |
163 |
atggttagagaaaggttttgtaacgttttggtttgagacattgtttgtcactttcttccctaacgtggcaagtataagtgttttgagtc |
251 |
Q |
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| T |
34966775 |
atggttagagaaaggttttgtaacgttttggtttgagtcattgtttgtcactttcttccctaacgaggcaagtataagtgttttgagtc |
34966687 |
T |
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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 34966831 - 34966773
Alignment:
| Q |
12 |
ataggattgaagtatcacaattgactctcgatcaccggaggcatggggtgatactaatg |
70 |
Q |
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| T |
34966831 |
ataggattgaagtatcacaattgactctcgatcaccggaggcatggggtgatactaatg |
34966773 |
T |
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