View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_261 (Length: 246)
Name: NF1345_low_261
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_261 |
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| [»] scaffold0110 (2 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 10953 - 11199
Alignment:
| Q |
5 |
ataattatttttcaagatagcctacgcctaagcttaagggtgcataca-------ttgaacaatagtctccacctatacactcatagtttgaacattaat |
97 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10953 |
ataattattttttaagatagcctacgcttaagcttaagggtgcatagacggatgcttgaacaatagtctccgcctatacactcatagtttgaacattaat |
11052 |
T |
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| Q |
98 |
ttttaaagccccctaaattaatagctcatataaataagttaaactatatcgtaagtatttgttcaagcccgttttgcttaattaaacaagagttatgaca |
197 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11053 |
ttctaaagccccctaaattaatagctcatataaataagttaaattatatcgtaagtatttattcaagcccgttttgcttaattaaacaagagttatgaca |
11152 |
T |
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| Q |
198 |
tctattttatgataattttcaacctagaaatacattctcctatgata |
244 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11153 |
tctattttatgataattttcaacctagaaatacgttctcctatgata |
11199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 18690 - 18936
Alignment:
| Q |
5 |
ataattatttttcaagatagcctacgcctaagcttaagggtgcataca-------ttgaacaatagtctccacctatacactcatagtttgaacattaat |
97 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18690 |
ataattattttttaagatagcctacgcttaagcttaagggtgcatagacggatgcttgaacaatagtctccgcctatacactcatagtttgaacattaat |
18789 |
T |
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| Q |
98 |
ttttaaagccccctaaattaatagctcatataaataagttaaactatatcgtaagtatttgttcaagcccgttttgcttaattaaacaagagttatgaca |
197 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18790 |
ttctaaagccccctaaattaatagctcatataaataagttaaattatatcgtaagtatttattcaagcccgttttgcttaattaaacaagagttatgaca |
18889 |
T |
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| Q |
198 |
tctattttatgataattttcaacctagaaatacattctcctatgata |
244 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18890 |
tctattttatgataattttcaacctagaaatacgttctcctatgata |
18936 |
T |
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