View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_269 (Length: 241)
Name: NF1345_low_269
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_269 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 9972476 - 9972368
Alignment:
| Q |
63 |
gtaaatttaaaatgacattaaagtgcgtaacaatgttttt-aaggaaaaagtacataaccaatccatgtctatgatgtgtacatgtgtcaagatgttgga |
161 |
Q |
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| T |
9972476 |
gtaaatttaaaatgacattaaagtgcgtaacaatgttttttaaggaaaaagtacataaccaatccatgtctatgatgtgcacatgtgtcaagatgttgga |
9972377 |
T |
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| Q |
162 |
catgaaatc |
170 |
Q |
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| T |
9972376 |
catgaaatc |
9972368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 9972333 - 9972291
Alignment:
| Q |
199 |
aagaggtataaacaaaatgtataatatttgcatgttttgtttt |
241 |
Q |
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| T |
9972333 |
aagaggtataaacaaaatgtatcatatttgcaagttttttttt |
9972291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 9972488 - 9972460
Alignment:
| Q |
21 |
agtttagcttttgtaaatttaaaatgaca |
49 |
Q |
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| T |
9972488 |
agtttagcttttgtaaatttaaaatgaca |
9972460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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