View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_273 (Length: 238)
Name: NF1345_low_273
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_273 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 43195773 - 43195552
Alignment:
| Q |
4 |
accacagacttatccacatacgagattggtgcctaaatgaaaatatcaaagtctaacaatatccacatttgttaaataagcccataaatatctaaataat |
103 |
Q |
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| T |
43195773 |
accacaaacttatccacatacgagattggagcctaaatgaaaatatcaaagtctaacaatatccacatttgttaaataagcccataaatatctaaataat |
43195674 |
T |
|
| Q |
104 |
aattttgttttggtatattgtctaaatcatttctacaaaagtcacatactacgtttttcttgtcctaattaaagtaattttccttgcacctgttaaatga |
203 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43195673 |
aattttattttggtatattgtctaaatcatttctacaaaattcacatactacgtttttcttgtcctaaataaagtaattttccttgcacctgttaaatga |
43195574 |
T |
|
| Q |
204 |
ccttgaccatgcatgttaatga |
225 |
Q |
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|||||||||||||||||||||| |
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| T |
43195573 |
ccttgaccatgcatgttaatga |
43195552 |
T |
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