View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_282 (Length: 228)
Name: NF1345_low_282
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_282 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 44799089 - 44798962
Alignment:
| Q |
1 |
gcaataattggtgttggaggtctagttgaagagtaactaacccaaacacgaaccattttcatatcatctctatactcaatccatgcattgatgattttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44799089 |
gcaataattggtgttggaggtctagttgaagagtaactaacccaaacacgaaccattttcatatcatctctatactcaatccatgcattgatgattttcc |
44798990 |
T |
|
| Q |
101 |
cacttttcaaatcaatccgacgtgaaag |
128 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
44798989 |
cacttttcaaatcaatccgacgtgaaag |
44798962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University