View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_288 (Length: 221)
Name: NF1345_low_288
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_288 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 45 - 221
Target Start/End: Complemental strand, 3220720 - 3220544
Alignment:
| Q |
45 |
atcatcaatcatgacaactgcaaatactctcaacctcggcgggatccctatactggatcaaaggcttttgccggcggatatttttgctactggtgcagga |
144 |
Q |
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| T |
3220720 |
atcagcaatcatgacaactgcaaatactctcaacctcggcgggatacctatactggatcaaaggcttttgccggctgatatttttgctactggtgcagga |
3220621 |
T |
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| Q |
145 |
catgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattacgttccttatctgtg |
221 |
Q |
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| T |
3220620 |
catgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattatgttccttatctgtg |
3220544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 3225700 - 3225532
Alignment:
| Q |
50 |
caatcatgacaactgcaaatactctcaacctcggcgggatccctatactggatcaaaggcttttgccggcggatatttttgctactggtgcaggacatgt |
149 |
Q |
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| T |
3225700 |
caatcatgacaactgcaaatactctcaacctcggcgggatccctatactggatcaaaggctttttccggctgatattttcgctactggtgcaggacatgt |
3225601 |
T |
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| Q |
150 |
taatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattacgttccttatct |
218 |
Q |
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| T |
3225600 |
taatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattatgttccttatct |
3225532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 45 - 218
Target Start/End: Complemental strand, 3230953 - 3230780
Alignment:
| Q |
45 |
atcatcaatcatgacaactgcaaatactctcaacctcggcgggatccctatactggatcaaaggcttttgccggcggatatttttgctactggtgcagga |
144 |
Q |
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| T |
3230953 |
atcagcaatcatgacaactgcaaatactctcaacctcggcgggatacctatactggatcaaaggcttttgccggctgatattttcgctactggtgcagga |
3230854 |
T |
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| Q |
145 |
catgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattacgttccttatct |
218 |
Q |
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| T |
3230853 |
catgttaatccttttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattatgttccttatct |
3230780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 45 - 221
Target Start/End: Original strand, 3179088 - 3179264
Alignment:
| Q |
45 |
atcatcaatcatgacaactgcaaatactctcaacctcggcgggatccctatactggatcaaaggcttttgccggcggatatttttgctactggtgcagga |
144 |
Q |
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| T |
3179088 |
atcagcaatcatgacaactgctaatactctcaacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcagga |
3179187 |
T |
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| Q |
145 |
catgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattacgttccttatctgtg |
221 |
Q |
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| T |
3179188 |
catgttaatcctgttaaagctaatgatcctggtcttgtttatgatattcaaccagaagattacgttccttatctgtg |
3179264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 45 - 221
Target Start/End: Complemental strand, 3239752 - 3239576
Alignment:
| Q |
45 |
atcatcaatcatgacaactgcaaatactctcaacctcggcgggatccctatactggatcaaaggcttttgccggcggatatttttgctactggtgcagga |
144 |
Q |
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| T |
3239752 |
atcagcaatcatgacaactgctaatactctcaacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcagga |
3239653 |
T |
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| Q |
145 |
catgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattacgttccttatctgtg |
221 |
Q |
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| T |
3239652 |
catgttaatcctgttaaagctaatgatcctggtcttgtttatgatattcaaccagaagattacgttccttatctgtg |
3239576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 3201837 - 3201714
Alignment:
| Q |
98 |
tggatcaaaggcttttgccggcggatatttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaacc |
197 |
Q |
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| T |
3201837 |
tggaccaaaggcttctaccagctgatgtatttgccactggtgctggacatgttaacccttcaaaagcaaacgatccgggacttgtttatgatattgaaac |
3201738 |
T |
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| Q |
198 |
agaagattacgttccttatctgtg |
221 |
Q |
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| T |
3201737 |
aaatgattatgttccttatttgtg |
3201714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 221
Target Start/End: Complemental strand, 3207782 - 3207688
Alignment:
| Q |
127 |
tttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattacgttccttatctgtg |
221 |
Q |
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||||| |||||||| |||||||| || ||| ||||| |||||||| || |||||||||||||||||| || | ||||| ||||||||| |||| |
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| T |
3207782 |
tttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggacttgtttatgatattgaaacaaatgattatgttccttatttgtg |
3207688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 3215718 - 3215630
Alignment:
| Q |
127 |
tttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattacgttcctta |
215 |
Q |
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| T |
3215718 |
tttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatattgaaccaaatgattatgttcctta |
3215630 |
T |
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