View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_289 (Length: 221)
Name: NF1345_low_289
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_289 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: scaffold0425 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 4506 - 4294
Alignment:
| Q |
1 |
attaattttgtttgttttttcaaaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4506 |
attaattttgtttgttttttcaaaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttga |
4407 |
T |
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| Q |
101 |
tcattcatcgctcctcaccaacctcctcctagctagatgctttgcaacacaacttctgtgccgcactgttgttcctgcacattcacgaccacggcaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4406 |
tcattcatcgctcctcaccaacctcctcctagctagatgctttgcaacacaacttctgtgccgcactgttgttcctgcacattcacgaccacggcaacaa |
4307 |
T |
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| Q |
201 |
atctgtctctgct |
213 |
Q |
| |
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|||||||| |||| |
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| T |
4306 |
atctgtctttgct |
4294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 6852643 - 6852446
Alignment:
| Q |
1 |
attaattttgtttgttttttcaaaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttga |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6852643 |
attaattttgtttgttttttcaaaagggaaaagaatgcaatatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttga |
6852544 |
T |
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| Q |
101 |
tcattcatcgctcctcaccaacctcctcctagctagatgctttgcaacacaacttctgtgccgcactgttgttcctgcacattcacgaccacggcaac |
198 |
Q |
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| T |
6852543 |
tcattcatcgctcctcaccaacctcctcctagctagatgctttgcaacacaacttttgtgccacagtgctgttcctgcacattcacgaccatggcaac |
6852446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 325620 - 325520
Alignment:
| Q |
1 |
attaattttgtttgttttttcaaaaggaaaaagaatgcactatctaataatcttaatatatttcttttgattaatatcatttccttcttctctcttttga |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
325620 |
attaattttgtttggtttttcaaaaggaaaaagaatgcaatatctaataatcgtaatatatttcttttgattaatatcatttccttcttctctcttttga |
325521 |
T |
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| Q |
101 |
t |
101 |
Q |
| |
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| |
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|
| T |
325520 |
t |
325520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 34853292 - 34853249
Alignment:
| Q |
6 |
ttttgtttgttttttcaaaaggaaaaagaatgcactatctaata |
49 |
Q |
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||||||||||||||||||||| |||||||||||| ||| ||||| |
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| T |
34853292 |
ttttgtttgttttttcaaaagaaaaaagaatgcagtatttaata |
34853249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 31911629 - 31911672
Alignment:
| Q |
6 |
ttttgtttgttttttcaaaaggaaaaagaatgcactatctaata |
49 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
31911629 |
ttttgtttgttttttcaaaaggaaaaagaatgcagtatttaata |
31911672 |
T |
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