View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_292 (Length: 215)
Name: NF1345_low_292
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_292 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0035 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 76455 - 76561
Alignment:
| Q |
91 |
cagagacagaataccttaaacgcttcaaacttaacggcgccatcgacagtgaaacattcaagacaaagattcctgtcattacgtacgatgatgttcaacc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
76455 |
cagagacagaataccttaaacgcttcaaacttaacggcgccatcgaccgtgaaacattcaagacaaagattcctgtcatcacgtacgatgatgttcaacc |
76554 |
T |
|
| Q |
191 |
agagatt |
197 |
Q |
| |
|
||||||| |
|
|
| T |
76555 |
agagatt |
76561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 4486449 - 4486399
Alignment:
| Q |
16 |
atggcacataaagaagttcacttctcttatccaaattatgcattccatcat |
66 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
4486449 |
atggcacataaagaagttcgcttctgttatccaaattatgcattccatcat |
4486399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 26492255 - 26492305
Alignment:
| Q |
16 |
atggcacataaagaagttcacttctcttatccaaattatgcattccatcat |
66 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
26492255 |
atggcacataaagaagatcgcttctgttatccaaattatgcattccatcat |
26492305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 4909496 - 4909446
Alignment:
| Q |
16 |
atggcacataaagaagttcacttctcttatccaaattatgcattccatcat |
66 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
4909496 |
atggtacataaagaagttcgcttctgttatccaaattatgcattccatcat |
4909446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University