View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_30 (Length: 569)

Name: NF1345_low_30
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_30
NF1345_low_30
[»] chr7 (3 HSPs)
chr7 (41-540)||(1322618-1323118)
chr7 (424-539)||(18367569-18367684)
chr7 (251-298)||(10289260-10289307)
[»] chr1 (4 HSPs)
chr1 (424-539)||(35762295-35762410)
chr1 (94-190)||(36386566-36386663)
chr1 (251-298)||(43407836-43407883)
chr1 (454-506)||(51443691-51443743)
[»] chr6 (2 HSPs)
chr6 (424-539)||(23260821-23260936)
chr6 (359-431)||(21511075-21511147)
[»] chr5 (1 HSPs)
chr5 (49-232)||(28201412-28201599)
[»] chr3 (5 HSPs)
chr3 (424-539)||(8730694-8730809)
chr3 (424-539)||(9082581-9082696)
chr3 (302-406)||(27758843-27758947)
chr3 (233-302)||(27758964-27759034)
chr3 (251-298)||(7337163-7337210)
[»] chr8 (2 HSPs)
chr8 (87-190)||(26161922-26162027)
chr8 (344-432)||(26161661-26161749)
[»] scaffold0054 (2 HSPs)
scaffold0054 (50-168)||(31681-31800)
scaffold0054 (346-431)||(31214-31299)
[»] scaffold0013 (1 HSPs)
scaffold0013 (433-504)||(243402-243473)


Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 41 - 540
Target Start/End: Original strand, 1322618 - 1323118
Alignment:
Q  41 aggcacacaaaatgcatatgatatgaatgacatgaatcctatccaaccactaaggcaaacacaatcaactattaataatcatcatgcacatgacccaaaa 140  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  1322618 aggcacacaaaatgcatatgatatgaatgacatgaatgcaatccaaccactaaaacaaacacaatcaattattaataatcatcatgcacatgacccaaaa 1322717  T
Q  141 ccaatcttttcataaaactcatttttccattattttctttctttctttaatatatcaaaatctaacatttatttctcaaa-atcacaacacatgtttctt 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1322718 ccaatcttttcataaaactcatttttccattattttctttctttctttaatatatcaaaatctaacatttatttctcaaacatcacaacacatgtttctt 1322817  T
Q  240 cacatatatcattcacatcacatcctcatgcacaaatatcatataaaacataattaaaatcataaattttaccacttaaagttgtgttttacttttattt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  1322818 cacatatatcattcacatcacatcctcatgcacaaatatcatataaaacataattaaaatcataaattttaccacataaagttgtgttttactttcattt 1322917  T
Q  340 cttcttaacaacagttatgaatcatactctttaaattataacacctaacaattagttacaattatgataagaatggaaaagtgtccttacctctaagact 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1322918 cttcttaacaacagttatgaatcatactctttaaattataacacctaacaattagttacaattatgataagtatggaaaagtgtccttacctctaagact 1323017  T
Q  440 tgtttttcaaacgcgaaaactcaacaacctcacggataatttgcaagagaaagagttcaaagcttcaaaaacataaatcctaaaattagagacaaaatag 539  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1323018 tgtttttcaaacgcaaaaactcaacaacctcacggacaatttgcaagagaaagagttcaaagcttcaaaaatataaatcctaaaattagagacaaaatag 1323117  T
Q  540 g 540  Q
    |    
T  1323118 g 1323118  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 424 - 539
Target Start/End: Original strand, 18367569 - 18367684
Alignment:
Q  424 ccttacctctaagacttgtttttcaaacgcgaaaactcaacaacctcacggataatttgcaagagaaagagttcaaagcttcaaaaacataaatcctaaa 523  Q
    ||||||||||||||||| |||||| ||| || |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  18367569 ccttacctctaagacttatttttcgaacacggaaactcaacagcctcacggacaatttgcaagagaaagagttcaaagcttcaaaagcataaatcctaaa 18367668  T
Q  524 attagagacaaaatag 539  Q
    ||||||||||||||||    
T  18367669 attagagacaaaatag 18367684  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 298
Target Start/End: Original strand, 10289260 - 10289307
Alignment:
Q  251 ttcacatcacatcctcatgcacaaatatcatataaaacataattaaaa 298  Q
    |||||||||||||| ||| ||||| | |||||||||||||||||||||    
T  10289260 ttcacatcacatccacatacacaactttcatataaaacataattaaaa 10289307  T

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Target: chr1 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 424 - 539
Target Start/End: Original strand, 35762295 - 35762410
Alignment:
Q  424 ccttacctctaagacttgtttttcaaacgcgaaaactcaacaacctcacggataatttgcaagagaaagagttcaaagcttcaaaaacataaatcctaaa 523  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||    
T  35762295 ccttacctctaagacttgtttttcaaacgtggaaactcaacaacctcacagacaatttgcaagagaaatagttcaaagcttcaaaaacataaatcctaaa 35762394  T
Q  524 attagagacaaaatag 539  Q
    ||||||||||||||||    
T  35762395 attagagacaaaatag 35762410  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 36386566 - 36386663
Alignment:
Q  94 ggcaaacacaatcaactattaataatcatcatgcacatgaccc-aaaaccaatcttttcataaaactcatttttccattattttctttctttctttaa 190  Q
    ||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||||||||||||||  ||||| | |||||||||||| ||||||    
T  36386566 ggcaaacacaatcaaatattaataaccatcatgcacatgacccaaaaatcaatcttttcataaaactcacatttccttgattttctttcttcctttaa 36386663  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 298
Target Start/End: Original strand, 43407836 - 43407883
Alignment:
Q  251 ttcacatcacatcctcatgcacaaatatcatataaaacataattaaaa 298  Q
    |||||||||||||| ||| ||||| | |||||||||||||||||||||    
T  43407836 ttcacatcacatccacatacacaactttcatataaaacataattaaaa 43407883  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 506
Target Start/End: Original strand, 51443691 - 51443743
Alignment:
Q  454 gaaaactcaacaacctcacggataatttgcaagagaaagagttcaaagcttca 506  Q
    |||||||| |||||||||||||  | |||| || |||||||||||||||||||    
T  51443691 gaaaactctacaacctcacggagtacttgctagtgaaagagttcaaagcttca 51443743  T

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Target: chr6 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 424 - 539
Target Start/End: Original strand, 23260821 - 23260936
Alignment:
Q  424 ccttacctctaagacttgtttttcaaacgcgaaaactcaacaacctcacggataatttgcaagagaaagagttcaaagcttcaaaaacataaatcctaaa 523  Q
    |||||||||||||||||||||||| |||||| |||||||||| |||||| || |||||||| |||||||||||||||||||||||| |||||||||||||    
T  23260821 ccttacctctaagacttgtttttcgaacgcggaaactcaacagcctcacagacaatttgcaggagaaagagttcaaagcttcaaaagcataaatcctaaa 23260920  T
Q  524 attagagacaaaatag 539  Q
    ||||||||||||||||    
T  23260921 attagagacaaaatag 23260936  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 431
Target Start/End: Complemental strand, 21511147 - 21511075
Alignment:
Q  359 aatcatactctttaaattataacacctaacaattagttacaattatgataagaatggaaaagtgtccttacct 431  Q
    ||||||||| |||||| ||||| | ||| | |||||||| | |||||||||  ||||||||||||||||||||    
T  21511147 aatcatactttttaaactataatatctagccattagttagagttatgataactatggaaaagtgtccttacct 21511075  T

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Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 49 - 232
Target Start/End: Complemental strand, 28201599 - 28201412
Alignment:
Q  49 aaaatgcatatgatatgaatgac-atgaatcctatccaaccactaaggcaaacacaatcaactattaataatcatcatgcacatgaccc-aaaaccaatc 146  Q
    ||||||||| ||| ||| ||||| ||| || | |||| |||||| |||||||||||||||| |||||||| |||||||||||||||||| ||||||||||    
T  28201599 aaaatgcatttgacatgcatgacgatggatgcaatcccaccacttaggcaaacacaatcaaatattaatattcatcatgcacatgacccaaaaaccaatc 28201500  T
Q  147 ttttcataaaactcatttttccattattttctttctttctttaatatatc-aaaatctaacatttatttctcaaa-atcacaacacat 232  Q
    ||||||||||||||   ||| ||||||||||||||||||||| ||  ||| |||||||||||||| ||||||||| ||||||||||||    
T  28201499 ttttcataaaactcgcattttcattattttctttctttctttgattcatcaaaaatctaacatttctttctcaaacatcacaacacat 28201412  T

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Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 424 - 539
Target Start/End: Complemental strand, 8730809 - 8730694
Alignment:
Q  424 ccttacctctaagacttgtttttcaaacgcgaaaactcaacaacctcacggataatttgcaagagaaagagttcaaagcttcaaaaacataaatcctaaa 523  Q
    ||||||||  ||||||||||||||||||| ||||| ||||||||||||||||  | |||||||||||||||||||||||||||||| |||||||||||||    
T  8730809 ccttaccttaaagacttgtttttcaaacgtgaaaaatcaacaacctcacggacgacttgcaagagaaagagttcaaagcttcaaaagcataaatcctaaa 8730710  T
Q  524 attagagacaaaatag 539  Q
    |||||||||| |||||    
T  8730709 attagagacataatag 8730694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 424 - 539
Target Start/End: Complemental strand, 9082696 - 9082581
Alignment:
Q  424 ccttacctctaagacttgtttttcaaacgcgaaaactcaacaacctcacggataatttgcaagagaaagagttcaaagcttcaaaaacataaatcctaaa 523  Q
    ||||||||  ||||||||||||||||||| ||||| ||||||||||||||||  | |||||||||||||||||||||||||||||| |||||||||||||    
T  9082696 ccttaccttaaagacttgtttttcaaacgtgaaaaatcaacaacctcacggacgacttgcaagagaaagagttcaaagcttcaaaagcataaatcctaaa 9082597  T
Q  524 attagagacaaaatag 539  Q
    |||||||||| |||||    
T  9082596 attagagacataatag 9082581  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 302 - 406
Target Start/End: Complemental strand, 27758947 - 27758843
Alignment:
Q  302 taaattttaccacttaaagttgtgttttacttttatttcttcttaacaacagttatgaatcatactctttaaattataacacctaacaattagttacaat 401  Q
    ||||||||||||||||| ||||| ||||| ||||||||||  ||| ||||| ||||||||  ||||||||||||||||| ||||||| |||||||||| |    
T  27758947 taaattttaccacttaaggttgtattttaattttatttctctttatcaacaattatgaattgtactctttaaattataatacctaaccattagttacatt 27758848  T
Q  402 tatga 406  Q
    |||||    
T  27758847 tatga 27758843  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 27759034 - 27758964
Alignment:
Q  233 gtttcttcacatatatcattc-acatcacatcctcatgcacaaatatcatataaaacataattaaaatcat 302  Q
    ||||||||| ||||||||||| |||||||||| |||| |||||||||||| |   ||||||||||||||||    
T  27759034 gtttcttcatatatatcattccacatcacatcttcatacacaaatatcatgttggacataattaaaatcat 27758964  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 298
Target Start/End: Original strand, 7337163 - 7337210
Alignment:
Q  251 ttcacatcacatcctcatgcacaaatatcatataaaacataattaaaa 298  Q
    |||||||||||||| ||| ||||| | |||||||||||||||||||||    
T  7337163 ttcacatcacatccacatacacaactttcatataaaacataattaaaa 7337210  T

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Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 26162027 - 26161922
Alignment:
Q  87 ccactaaggcaaacacaatcaactattaataatcatcat-gcacatgacccaaaa-ccaatcttttcataaaactcatttttccattattttctttcttt 184  Q
    ||||| |||||||||||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||||||||||  ||||| | |||||||||||||    
T  26162027 ccacttaggcaaacacaatcaaatattaataaccatcattgcacatgacccaaaaaccaatcttttcataaaactcacatttccttgattttctttcttt 26161928  T
Q  185 ctttaa 190  Q
    ||||||    
T  26161927 ctttaa 26161922  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 26161749 - 26161661
Alignment:
Q  344 ttaacaacagttatgaatcatactctttaaattataacacctaacaattagttacaattatgataagaatggaaaagtgtccttacctc 432  Q
    ||||||||| ||||||| |||||||||||||| |||| ||||||| |||||||||| |||||||||| ||||  ||| | |||||||||    
T  26161749 ttaacaacaattatgaaccatactctttaaatcataatacctaaccattagttacagttatgataagtatggggaagcgcccttacctc 26161661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 31800 - 31681
Alignment:
Q  50 aaatgcatatgatatgaatgacatgaatcctatccaaccactaaggcaaacacaatcaactattaataatcatcatgcacatgaccc-aaaaccaatctt 148  Q
    ||||||| |||||||||||||||||||| | || |    ||| || || ||||| ||||||||||||||| ||||| ||||| |||| |||| |||||||    
T  31800 aaatgcacatgatatgaatgacatgaatgcaataccgttacttagacagacacagtcaactattaataatgatcatacacataacccaaaaatcaatctt 31701  T
Q  149 ttcataaaactcatttttcc 168  Q
    |||||||||||||| |||||    
T  31700 ttcataaaactcatatttcc 31681  T

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Target: scaffold0054; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 431
Target Start/End: Complemental strand, 31299 - 31214
Alignment:
Q  346 aacaacagttatgaatcatactctttaaattataacacctaacaattagttacaattatgataagaatggaaaagtgtccttacct 431  Q
    ||||||| ||||||||||| ||||||||||||||| || |||| | |||||||| |||||||||| ||||  ||||| ||||||||    
T  31299 aacaacaattatgaatcatgctctttaaattataatacgtaaccactagttacagttatgataagcatggggaagtgcccttacct 31214  T

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Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 504
Target Start/End: Original strand, 243402 - 243473
Alignment:
Q  433 taagacttgtttttcaaacgcgaaaactcaacaacctcacggataatttgcaagagaaagagttcaaagctt 504  Q
    |||||||||||||||||| | |||| ||||||||||||| | |  | |||||||||||||||||||||||||    
T  243402 taagacttgtttttcaaatgtgaaagctcaacaacctcaagaaggacttgcaagagaaagagttcaaagctt 243473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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