View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_40 (Length: 543)
Name: NF1345_low_40
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 451
Target Start/End: Complemental strand, 11175699 - 11175276
Alignment:
| Q |
30 |
tggacaatgtgtggttggattgtttgtactaagaaaaggtttcatctttttatttaaaaataaatttgtgatttttctaattagaatttgtgttcataaa |
129 |
Q |
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| T |
11175699 |
tggacagtgtgtggttggattgtttgtactaaggaaaagtttcatttttttatttaaaaataaatctgtgttttttctaatgagaaattgtgttcataaa |
11175600 |
T |
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| Q |
130 |
agaatatttgtttgataaaggccattcgataaggcttttaatgaatgtttattggttgacggagtcattttaataagataacataagataagactacttg |
229 |
Q |
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| T |
11175599 |
agaatatttgttggatgagggccactgggtaaggcttttaatgaatgtttattggttgatggagtcattttgataagataacat-----aagactacttg |
11175505 |
T |
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| Q |
230 |
ggtatatgggtctcattcaatccaaaatataac-----ataagactgatatttcctcaaaagatgagactccaattgacgtgatgttgtacaccccaaat |
324 |
Q |
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| T |
11175504 |
ggtatatgggtctcattcaatccaaaagataacataagataagactgatatttcctcaaaagatgaggctccaattgacgtgatgttgtacaccccaaat |
11175405 |
T |
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| Q |
325 |
aatcatatgctctaaaatcaacttatccacttgcctac--ctcactaatatgacgcatctctcctacctcacttgatatacttatcaccaaataaattag |
422 |
Q |
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| T |
11175404 |
aatcatatgctttaaaatcaacttatccacttgcctacagctcactgatatgatgcatctctcctacctcacttgatatgcttatcaccaaataaattac |
11175305 |
T |
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| Q |
423 |
tatagaacatcgataattttatgttattt |
451 |
Q |
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| T |
11175304 |
tatagaacatcaataactttatgttattt |
11175276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 478 - 530
Target Start/End: Complemental strand, 11175287 - 11175235
Alignment:
| Q |
478 |
tttatgttatttcaaaacgataaggttatttaaagtctagctgaaagtgatat |
530 |
Q |
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| T |
11175287 |
tttatgttatttcaaaacgataaggttatttaaattctagctgaaagtgatat |
11175235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 388 - 451
Target Start/End: Complemental strand, 45265418 - 45265355
Alignment:
| Q |
388 |
acctcacttgatatacttatcaccaaataaattagtatagaacatcgataattttatgttattt |
451 |
Q |
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| T |
45265418 |
acctcacttgatatgcttatcacctaataaattagtatagaacatcaataattttatgttattt |
45265355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 45265573 - 45265507
Alignment:
| Q |
275 |
tttcctcaaaagatgagactccaattgacgtgatgttgtacaccccaaataatcatatgctctaaaat |
342 |
Q |
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| T |
45265573 |
tttcctcaaatgatgaggctccaattgacgt-atgttgcacaccccaaataatcatatgttttaaaat |
45265507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 523
Target Start/End: Complemental strand, 45265366 - 45265322
Alignment:
| Q |
478 |
tttatgttatttcaaaacgataaggttatttaaagtctagctgaaa |
523 |
Q |
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| T |
45265366 |
tttatgttatttcaaa-cgataaggtgatttaaagtctagttgaaa |
45265322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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