View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_43 (Length: 523)
Name: NF1345_low_43
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 29 - 429
Target Start/End: Complemental strand, 33949050 - 33948650
Alignment:
| Q |
29 |
agaatgttctcttcttcatctcctcagtaacagcccggtttattgtataatgaatttcatgagccgaaaccggtccacgccgcctcgaaaatgaaccgga |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33949050 |
agaatgttctcttcttcatctcctcagtaacagcccggtttattgtataatgaatttcatgagccgaaaccggtccacgccgcctcgaaaatgaaccgga |
33948951 |
T |
|
| Q |
129 |
actctcattagaccggaaactagaattcctaacttcatcttccacaacacttttcttagacaaagctgtgtactttctcaaaggatctttttcattagct |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33948950 |
actctcattagaccggaaactagaattcctaacttcatcttccacaacacttttcttagacaaagctgtgtactttctcaaaggatctttttcattagct |
33948851 |
T |
|
| Q |
229 |
cttccttcagaagcacttcgaaataaaagaaaatctcttatcttccattttctataacctttagtgaaagacaagaacgatttcacgttgttacttgtgg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33948850 |
cttccttcagaagcacttcgaaataaaagaaaatctcttatcttccattttctataacctttagtgaaagacaagaacgatttcacgttgttacttgtgg |
33948751 |
T |
|
| Q |
329 |
aagaagaaacagaaacatctttatcttctgagttttctatgatgtctgagactcttaagggagacaaagacctgcttcctttcctaccagaagatgttac |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33948750 |
aagaagaaacagaaacatctttatcttctgagttttctatgatgtctgagactcttaagggagacaaagacctgcttcctttcctaccagaagatgttac |
33948651 |
T |
|
| Q |
429 |
c |
429 |
Q |
| |
|
| |
|
|
| T |
33948650 |
c |
33948650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 33948605 - 33948568
Alignment:
| Q |
474 |
aattgcagcttcaaatggattagaatctctctcagtat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33948605 |
aattgcagcttcaaatggattagaatctctctcagtat |
33948568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 12258159 - 12258090
Alignment:
| Q |
227 |
ctcttccttcagaagcacttcgaaataaaagaaaatctcttatcttccattttctataacctttagtgaa |
296 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||| | | ||||||||||||| ||||| ||||| |
|
|
| T |
12258159 |
ctcttccttctgaagcacttcgaaatagtagaaaatctttgaatctccattttctatacccttttgtgaa |
12258090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University