View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_45 (Length: 515)
Name: NF1345_low_45
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 155 - 410
Target Start/End: Complemental strand, 34225579 - 34225324
Alignment:
| Q |
155 |
atacaaatcaatattaattatattcatcaatatagaatccgaaggaacgagacgatatgcaaagtgtttttgtaatatgaagaatttttaactaatatac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34225579 |
atacaaatcaatattaattatattcatcaatatagaatccgaaggaacgagacgatatgcaaagtgtttttgtaatatgaagaatttttaactaatatac |
34225480 |
T |
|
| Q |
255 |
ttttataggactcttgcattgcttaagtactacatttctttctaataatgttattatagtttatatgttatgtagaagatattgtcaagtgctaaaagaa |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34225479 |
ttttataggactcttgcattgcttaagtactacatttctttctaataatgttattataatttatatgttatgtagaagatattgtcaagtgctaaaagaa |
34225380 |
T |
|
| Q |
355 |
tgaataagaattaatctctctatattatatgttctatacaatacatgctttgcttg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34225379 |
tgaataagaattaatctctctatattatatgttctatacaatacatgctttgcttg |
34225324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 155 - 410
Target Start/End: Complemental strand, 34229707 - 34229452
Alignment:
| Q |
155 |
atacaaatcaatattaattatattcatcaatatagaatccgaaggaacgagacgatatgcaaagtgtttttgtaatatgaagaatttttaactaatatac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34229707 |
atacaaatcaatattaattatattcatcaatatagaatccgaaggaacgagacgatatgcaaagtgtttttgtaatatgaagaatttttaactaatatac |
34229608 |
T |
|
| Q |
255 |
ttttataggactcttgcattgcttaagtactacatttctttctaataatgttattatagtttatatgttatgtagaagatattgtcaagtgctaaaagaa |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34229607 |
ttttataggactcttgcattgcttaagtactacatttctttctaataatgttattataatttatatgttatgtagaagatattgtcaagtgctaaaagaa |
34229508 |
T |
|
| Q |
355 |
tgaataagaattaatctctctatattatatgttctatacaatacatgctttgcttg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34229507 |
tgaataagaattaatctctctatattatatgttctatacaatacatgctttgcttg |
34229452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 434 - 503
Target Start/End: Complemental strand, 34225305 - 34225236
Alignment:
| Q |
434 |
aataaactggtaacttttatgttgaattgatactctgcaagcctaattttgatctcatttaatcaagaat |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34225305 |
aataaactggtaacttttatgttgaattgatactctgcaagcctaattttgatctcatttaatcaagaat |
34225236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 434 - 503
Target Start/End: Complemental strand, 34229433 - 34229364
Alignment:
| Q |
434 |
aataaactggtaacttttatgttgaattgatactctgcaagcctaattttgatctcatttaatcaagaat |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34229433 |
aataaactggtaacttttatgttgaattgatactctgcaagcctaattttgatctcatttaatcaagaat |
34229364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 434 - 503
Target Start/End: Original strand, 41752263 - 41752332
Alignment:
| Q |
434 |
aataaactggtaacttttatgttgaattgatactctgcaagcctaattttgatctcatttaatcaagaat |
503 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||| |
|
|
| T |
41752263 |
aataaactagtaacttttatgttgaattgatactctgcaagcctaattttgatttcctttaattaagaat |
41752332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University