View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_48 (Length: 506)
Name: NF1345_low_48
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_48 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 114 - 482
Target Start/End: Complemental strand, 41311395 - 41311027
Alignment:
| Q |
114 |
ataaaaatacatggtatctagttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataag |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311395 |
ataaaaatacatggtatctagttcaattgacttggagattttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataag |
41311296 |
T |
|
| Q |
214 |
aatactgcaagctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttatta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41311295 |
aatactgcaagctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttatta |
41311196 |
T |
|
| Q |
314 |
ttgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttgg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311195 |
ttgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttgg |
41311096 |
T |
|
| Q |
414 |
cagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41311095 |
cagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 125 - 477
Target Start/End: Complemental strand, 43165062 - 43164710
Alignment:
| Q |
125 |
tggtatctagttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataagaatactgcaag |
224 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
43165062 |
tggtatctagttcgattgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaag |
43164963 |
T |
|
| Q |
225 |
ctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgat |
324 |
Q |
| |
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|| | |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| || || |||||||||| |||||||||||||||| |||| |
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| T |
43164962 |
acctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgat |
43164863 |
T |
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| Q |
325 |
ttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttatta |
424 |
Q |
| |
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|||||||||| |||| ||||||||| |||||| ||||||| |||||||||||||| ||| | | ||||||||||| ||||| || || ||||||| | |
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| T |
43164862 |
ttaaaggaaaagacaatgtcagagattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatca |
43164763 |
T |
|
| Q |
425 |
gtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
477 |
Q |
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| |||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
43164762 |
gcgtatggaatatggagatgtctacacttaagatatgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 8e-56; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 190 - 477
Target Start/End: Original strand, 30165608 - 30165883
Alignment:
| Q |
190 |
tttgattctgatttgccttataagaatactgcaagctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatg |
289 |
Q |
| |
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||||||||| |||||||||||| ||| ||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || |
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| T |
30165608 |
tttgattctcatttgccttataggaaccctgcatgctctgaaggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataatt |
30165707 |
T |
|
| Q |
290 |
ataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactag |
389 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||| ||| ||| || || | ||| | |
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| T |
30165708 |
atcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatagctcttccaaatgattgttctcgtg------------g |
30165795 |
T |
|
| Q |
390 |
aatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
477 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||||||| |||||| | ||||| |||||||||||||||||||||||||| |
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| T |
30165796 |
aatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagatatgggtgatgcaagaatac |
30165883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 135 - 482
Target Start/End: Complemental strand, 30125328 - 30124981
Alignment:
| Q |
135 |
ttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataagaatactgcaagctctaatggt |
234 |
Q |
| |
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|||||||||||||||||| ||| ||||||||| |||| | ||||| ||||||||||||||||| |||||||||||| ||||||||| ||||||| || |
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| T |
30125328 |
ttcaattgacttggagattttcccattgagagctaataagtgggaggaaattgagtttgattctcatttgccttataggaatactgctcgctctaacgga |
30125229 |
T |
|
| Q |
235 |
ggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaa |
334 |
Q |
| |
|
| ||||||||||||| |||||||||||| |||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |
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| T |
30125228 |
tggcccagagttgggttgttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaag |
30125129 |
T |
|
| Q |
335 |
tgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaa |
434 |
Q |
| |
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|||| ||||||| | ||||| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| |
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| T |
30125128 |
cgacaatgtcagaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggat |
30125029 |
T |
|
| Q |
435 |
tatggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
482 |
Q |
| |
|
| | |||||| | || |||||||| |||||||||| |||||| |||| |
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|
| T |
30125028 |
tcttgagatggatgcagttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
264 |
ttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
363 |
Q |
| |
|
|||||||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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|
| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
364 |
ggtttttatagtgatt |
379 |
Q |
| |
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| ||||||||| |||| |
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| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 239 - 349
Target Start/End: Complemental strand, 30131178 - 30131068
Alignment:
| Q |
239 |
ccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgac |
338 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||||||||| ||||| || || |||| || |||||||||||| |||||| |||||||||||||||| |
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|
| T |
30131178 |
ccagagtcgggttgttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgac |
30131079 |
T |
|
| Q |
339 |
actgtcagaga |
349 |
Q |
| |
|
| ||||||||| |
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|
| T |
30131078 |
aatgtcagaga |
30131068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 349
Target Start/End: Complemental strand, 30120174 - 30120068
Alignment:
| Q |
243 |
agttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactg |
342 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | |
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| T |
30120174 |
agttgggttgttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaata |
30120075 |
T |
|
| Q |
343 |
tcagaga |
349 |
Q |
| |
|
||||||| |
|
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| T |
30120074 |
tcagaga |
30120068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 28180559 - 28180514
Alignment:
| Q |
126 |
ggtatctagttcaattgacttggagatgttctcattgagaggtaat |
171 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||| |||| |
|
|
| T |
28180559 |
ggtatctagttcaattgaattagagattttctcattgagagctaat |
28180514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 480
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
447 |
tacacttaagatatgggtgatgcaagaatacaca |
480 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
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| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 131 - 364
Target Start/End: Original strand, 21426470 - 21426703
Alignment:
| Q |
131 |
ctagttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataagaatactgcaagctctaa |
230 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| | || ||||| ||||||||||| ||| |||| |||||||||||| | ||||| || | | |
|
|
| T |
21426470 |
ctagttcaattgacttgaagattttctcattgagagctcataaatggaaacaaattgaggttgcttctcatttgccttatatcattactgatgtctatga |
21426569 |
T |
|
| Q |
231 |
tggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaag |
330 |
Q |
| |
|
| | |||||||| ||||||||||| ||||| |||||||||||||| || || || | |||| | |||||||||||||||| ||||||||||| |
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| T |
21426570 |
atttcggcccagagtcgggtcgttcttaaatggggctattcattggctggttcataattctgagaccaaccgggatgttattattgcccttgatttaaag |
21426669 |
T |
|
| Q |
331 |
gaaatgacactgtcagagactgctctcccagatg |
364 |
Q |
| |
|
|||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
21426670 |
gaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 126 - 210
Target Start/End: Original strand, 21430161 - 21430244
Alignment:
| Q |
126 |
ggtatctagttcaattgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttat |
210 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||| |||||||| ||| |||| ||||||||||| |
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| T |
21430161 |
ggtatctagttcaattgacttagagattttctcattgagagctaatcaat-ggaaaaaattgaggttgcttctcatttgccttat |
21430244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1051 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 2039 - 1971
Alignment:
| Q |
141 |
tgacttggagatgttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgcctta |
209 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| | ||| ||||||||||||||| |||| ||||||||| |
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|
| T |
2039 |
tgacttggagattttctcattgagagctaataagtggaaacaaattgagtttggttctcctttgcctta |
1971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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