View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_5 (Length: 833)
Name: NF1345_low_5
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 736; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 8 - 804
Target Start/End: Complemental strand, 31399372 - 31398576
Alignment:
| Q |
8 |
tatcataggagtagcataggtcactcattcctgcaaattgtaaaatgataaccagaaatttacattagtttcaaattctggttacatttagtttctcata |
107 |
Q |
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| T |
31399372 |
tatcataggag-agcataggtcactcattcctgcaaattgtaaaatgataaccagaaatttacattagtttcaaattctggttacatttagtttctcata |
31399274 |
T |
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| Q |
108 |
agattacaagtggatcataattaaaattaatctatgaataagtcaatgttttaaattgcggtatgcaactgcagtatatcagggtttaaaagatatcaac |
207 |
Q |
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| T |
31399273 |
agattacaagtggatcataattaaaattaatctatgaataagtcaaggttttaaattgcggtatgcaactgcagtatatcagggtttaaaagatatcaac |
31399174 |
T |
|
| Q |
208 |
aaccacaattatcactacatctatatacattttctgctattttaagtcaatgaccaagtattagtcaatgtcgaaaagaggcaacnnnnnnnnnntta-c |
306 |
Q |
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| T |
31399173 |
aaccacaattatcattacatctacatacattttctgctattttaagtcaatgaccaagtattagtcaatgtcgaaaagaggcaacaaaaaaaaaattaac |
31399074 |
T |
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| Q |
307 |
attcaaatgaatcacatatctaatgactaaccttgaccatagccaacatcattatctatcctagcataaacagcaagaatatcccataattttgacaaat |
406 |
Q |
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| T |
31399073 |
attcaaatgaatcacatatctaatgactaaccttgaccatagccaacatcattatctatcctagcataaacagcaagaatatcccataattttgacaaat |
31398974 |
T |
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| Q |
407 |
tctctttcttctcataaaaaaccagtgtcctatcggtacgaatcacgtcaagacctgaaatgtgtttatataagaaaaagaaagtaagataattcaccat |
506 |
Q |
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| T |
31398973 |
tctctttcttctcataaaaaaccagtgtcctatcggtacgaatcacgtcaagacctgaaatgtgtttatataagaaaaagaaagtaagataattcaccat |
31398874 |
T |
|
| Q |
507 |
gtgagttattttatgatgatagaattttacatttcttcatttgaaaaacatccaatagtatacatattatagtgcattgagaacctaaaaatatttcaca |
606 |
Q |
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| T |
31398873 |
gtgagttattttatgatgatagaattttacatttcttcatttgaaaaacatccaatagtatacatattatagtgcattgagaacctaaaaatatttcaca |
31398774 |
T |
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| Q |
607 |
aacctatttgatgtagagttaacatccattgaattacttttttgtctgtcaccttctttgctgtattattagggcttggagcacctatttcttgaggagg |
706 |
Q |
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| T |
31398773 |
aacctatttgatgtagagttaacatccattgaattacttttttgtctgtcaccttctttgctgtattattagggcttggagcacctacttcttgaggagg |
31398674 |
T |
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| Q |
707 |
tacaatcactccattttctggattattttctaacaaaaccaatggatcttgaaccggtacaccatcgtcggtaactacaggtgcagtgataaatctac |
804 |
Q |
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| T |
31398673 |
tacaatcactccattttctggattattttctaacaaaaccaatggatcttgaaccggtacaccatcgtcggtaactacaggtgcagtgataaatctac |
31398576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 24562949 - 24562981
Alignment:
| Q |
153 |
atgttttaaattgcggtatgcaactgcagtata |
185 |
Q |
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| T |
24562949 |
atgttttaaattgcggtatgcaactgcagtata |
24562981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 335 - 466
Target Start/End: Original strand, 34941494 - 34941625
Alignment:
| Q |
335 |
aaccttgaccatagccaacatcattatctatcctagcataaacagcaagaatatcccataattttgacaaattctctttcttctcataaaaaaccagtgt |
434 |
Q |
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| T |
34941494 |
aaccttgaccgtatccaacttctttatctatccaagcataaaccgcaagaatatcccataattttgacaagttttcttgtttctcataaaaaaccaatgt |
34941593 |
T |
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| Q |
435 |
cctatcggtacgaatcacgtcaagacctgaaa |
466 |
Q |
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| T |
34941594 |
tctatcagtgcgaaccacgtcaagacctgaaa |
34941625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 601 - 658
Target Start/End: Original strand, 34941718 - 34941775
Alignment:
| Q |
601 |
ttcacaaacctatttgatgtagagttaacatccattgaattacttttttgtctgtcac |
658 |
Q |
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| T |
34941718 |
ttcacaaacctatttgatggagagttaacatccactggattagtttcttgtctgtcac |
34941775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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