View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_50 (Length: 506)

Name: NF1345_low_50
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_50
NF1345_low_50
[»] chr2 (27 HSPs)
chr2 (74-477)||(39215490-39215894)
chr2 (98-474)||(39161724-39162104)
chr2 (98-474)||(39207090-39207470)
chr2 (104-279)||(39369996-39370172)
chr2 (115-472)||(39388918-39389281)
chr2 (140-259)||(39192439-39192558)
chr2 (140-259)||(39198119-39198238)
chr2 (304-471)||(39192266-39192436)
chr2 (304-471)||(39197946-39198116)
chr2 (98-259)||(39222767-39222929)
chr2 (304-406)||(39222932-39223037)
chr2 (81-255)||(39397852-39398027)
chr2 (140-279)||(39414761-39414900)
chr2 (80-258)||(39459116-39459295)
chr2 (140-255)||(39468264-39468379)
chr2 (337-474)||(39370254-39370394)
chr2 (78-258)||(39473409-39473590)
chr2 (140-228)||(39137807-39137895)
chr2 (333-470)||(39381275-39381412)
chr2 (144-259)||(39381510-39381625)
chr2 (143-258)||(39421832-39421947)
chr2 (80-192)||(39152448-39152561)
chr2 (333-378)||(39421688-39421733)
chr2 (141-239)||(39494461-39494559)
chr2 (333-370)||(39468448-39468485)
chr2 (412-465)||(39223101-39223154)
chr2 (326-370)||(39459387-39459431)
[»] chr6 (2 HSPs)
chr6 (98-255)||(16113181-16113339)
chr6 (333-370)||(16113441-16113478)
[»] chr7 (2 HSPs)
chr7 (140-228)||(19807757-19807845)
chr7 (334-430)||(19807963-19808059)
[»] chr5 (2 HSPs)
chr5 (333-474)||(33561135-33561281)
chr5 (338-378)||(17059602-17059642)
[»] chr8 (1 HSPs)
chr8 (349-464)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 74 - 477
Target Start/End: Original strand, 39215490 - 39215894
Alignment:
Q  74 aggccgggttaaggagctcagtttaaaaaagaagcaatttgaaagccaagttgagagctttgaatcaaa-gagaagcaatttgaaggacggtggaaagaa 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39215490 aggccgggttaaggagctcagtttaaaaaagaagcaatttgaaagacaagttgagagctttgaatcaaaagagaagcaatttgaaggacggtggaaagaa 39215589  T
Q  173 cttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttga 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215590 cttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttga 39215689  T
Q  273 aaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaatgttcttattcatctagtttattgaaaga 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215690 aaaaattcgatttacgaccgacgaagcttgggtcaaggaaaaaatatattgaagaaacacaatcgggtaaatgttcttattcatctagtttattgaaaga 39215789  T
Q  373 gtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtc 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215790 gtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtc 39215889  T
Q  473 tttgt 477  Q
    |||||    
T  39215890 tttgt 39215894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 98 - 474
Target Start/End: Original strand, 39161724 - 39162104
Alignment:
Q  98 aaaaaagaagcaatttgaaagccaagttgagagctttgaatcaaag-agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttc 196  Q
    |||||| ||||| |||||||| |||||||||  |||  |||||||  |||| |||||||||||||||||||| ||||| |||   |||||| ||||| ||    
T  39161724 aaaaaataagcattttgaaagacaagttgaggacttcaaatcaaaacagaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctc 39161823  T
Q  197 aaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacga 296  Q
    |||||| | |  |||||| |||| |||||||| ||||| |||| ||||||||||||||||||||||| |||| |||| ||||| |||  || ||  | |     
T  39161824 aaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaagg 39161923  T
Q  297 agcttgggtcaaggaaaaaatatat---tgaagaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctc 393  Q
    ||| || ||||||||||||||||||   ||| |||| | |||| ||||||||||||| ||||||||| ||||||||||| ||| | || ||| ||||||     
T  39161924 agcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgttcctt 39162023  T
Q  394 ttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctt 474  Q
    ||||||||||||| | |||||  | || ||||||| || || |||||| |  |||||| ||||||||||||| ||||||||    
T  39162024 ttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtctt 39162104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 98 - 474
Target Start/End: Complemental strand, 39207470 - 39207090
Alignment:
Q  98 aaaaaagaagcaatttgaaagccaagttgagagctttgaatcaaag-agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttc 196  Q
    |||||| ||||| |||||||| |||||||||  |||  |||||||  |||| |||||||||||||||||||| ||||| |||   |||||| ||||| ||    
T  39207470 aaaaaataagcattttgaaagacaagttgaggacttcaaatcaaaacagaaacaatttgaaggacggtggaatgaactggagacgaaagagtataagctc 39207371  T
Q  197 aaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacga 296  Q
    |||||| | |  |||||| |||| |||||||| ||||| |||| ||||||||||||||||||||||| |||| |||| ||||| |||  || ||  | |     
T  39207370 aaagtaaatgagaaggagctcaacttaaaagaaaagcaatttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaagg 39207271  T
Q  297 agcttgggtcaaggaaaaaatatat---tgaagaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctc 393  Q
    ||| || ||||||||||||||||||   ||| |||| | |||| ||||||||||||| ||||||||| ||||||||||| ||| | || ||| ||||||     
T  39207270 agcctgagtcaaggaaaaaatatattgatgaggaaaaagaatccggtaaatgttcttcttcatctagattattgaaagaattttattataactgttcctt 39207171  T
Q  394 ttaatgatgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtctt 474  Q
    ||||||||||||| | |||||  | || ||||||| || || |||||| |  |||||| ||||||||||||| ||||||||    
T  39207170 ttaatgatgatgatattttttgaatcctgatctacttaattttttaaacacgtttttactcatgttaatgttgtatgtctt 39207090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 104 - 279
Target Start/End: Original strand, 39369996 - 39370172
Alignment:
Q  104 gaagcaatttgaaagccaagttgagagctttgaatc-aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagta 202  Q
    |||||||||||||| |||||| |||  |||  |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||     
T  39369996 gaagcaatttgaaacccaagtcgagcacttcaaatcgaaagaaaagcaatttgaaggacggtggaaagaacttgagttaaaagagaacaagttcatagtg 39370095  T
Q  203 caggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaatt 279  Q
    ||||| ||||||||| | ||||||||||||||||||||| |||||||||||| || | ||| |||| |||| |||||    
T  39370096 caggtgaaggagttcgaattaaaagagaagcagtttggaagacaagtcaagggtcttgagtcaaagatgaataaatt 39370172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 115 - 472
Target Start/End: Complemental strand, 39389281 - 39388918
Alignment:
Q  115 aaagccaagttgagagctttgaatcaaa-gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaagga 213  Q
    ||||||||||||||  |||  ||||||| ||| ||| |||| || |||| ||||| ||||| ||||| |||||| |||||||||||||| |||| |||||    
T  39389281 aaagccaagttgaggacttcaaatcaaaagagcagcgatttaaaagacgatggaacgaactggagttgaaagagtataagttcaaagtaaaggtgaagga 39389182  T
Q  214 gttcaagttaaaagagaagcagtttggaggacaagtcaaggatcctaagttaaagttgaaaaaattcgatttacgaccgacgaagcttgggtcaaggaaa 313  Q
    | |||| |||||||| |||||||||| ||| |||||||| |||||| ||| |||| |||| ||||| |||  || |   | | |||  | ||||||||||    
T  39389181 gctcaacttaaaagaaaagcagtttgaagggcaagtcaacgatcctgagtcaaagctgaataaatttgatggacaaataaaggagcccgagtcaaggaaa 39389082  T
Q  314 aaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgaca-- 408  Q
    |||||| ||||    |||| | |||| |||||||||||||||||||| |||||||||||||| |||   |||||| |||||||||||||||||||| |      
T  39389081 aaatattttgatggggaaaaagaatccggtaaatgttcttattcatccagtttattgaaagaatttttttacaactgttcctcttaatgatgatgatatt 39388982  T
Q  409 atttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgtc 472  Q
     |||||||| |  ||||||| || ||   || |||  |||||||||||||||||||| ||||||    
T  39388981 ttttttatagcttgatctacttaattccatagaaacgtttttaatcatgttaatgttgtatgtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 39192558 - 39192439
Alignment:
Q  140 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 239  Q
    |||||||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| ||||||||||    
T  39192558 aaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttg 39192459  T
Q  240 gaggacaagtcaaggatcct 259  Q
     ||||| |||||||||||||    
T  39192458 aaggactagtcaaggatcct 39192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 39198238 - 39198119
Alignment:
Q  140 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 239  Q
    |||||||||||||| |||||||| ||||  |||||||||| |||||||||||||||||||| | |||| |||||| |||| |||||||| ||||||||||    
T  39198238 aaagagaagcaattagaaggacgatggagtgaacttgagtcaaaagagaataagttcaaagcaaaggtgaaggagctcaacttaaaagaaaagcagtttg 39198139  T
Q  240 gaggacaagtcaaggatcct 259  Q
     ||||| |||||||||||||    
T  39198138 aaggactagtcaaggatcct 39198119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 471
Target Start/End: Complemental strand, 39192436 - 39192266
Alignment:
Q  304 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 400  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39192436 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39192337  T
Q  401 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 471  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39192336 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 304 - 471
Target Start/End: Complemental strand, 39198116 - 39197946
Alignment:
Q  304 gtcaaggaaaaaatatattgaaga---aacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 400  Q
    |||||||||||| |||||||| ||   || | |||| ||||||||| |||||||||||  |||||||| ||| ||||| | ||||  |||||||||||||    
T  39198116 gtcaaggaaaaagtatattgatgaggaaaaagaatcaggtaaatgtgcttattcatcttatttattgacagaatttcattgcaactattcctcttaatga 39198017  T
Q  401 tgatgacaatttttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgttttatgt 471  Q
    |||||| | ||||||||||  ||||||| || || |||||||| ||||||||||||||||||||| |||||    
T  39198016 tgatgatattttttataacatgatctacttaattctttaaaaacatttttaatcatgttaatgttctatgt 39197946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 98 - 259
Target Start/End: Original strand, 39222767 - 39222929
Alignment:
Q  98 aaaaaagaagcaatttgaaagccaagttgagagctttgaatcaaa-gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttc 196  Q
    |||||||||||| || ||||||||||| |||   ||| ||||||| |||||||||||||||| ||| |||||  ||||||||| | ||||||||||||||    
T  39222767 aaaaaagaagcatttcgaaagccaagtcgaggagtttaaatcaaaagagaagcaatttgaagaacgatggaataaacttgagtcagaagagaataagttc 39222866  T
Q  197 aaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcct 259  Q
    |||| | |||| |||||| |||| || ||||| |||  ||||| |||||||||||||||||||    
T  39222867 aaagcaaaggtgaaggagctcaacttcaaagaaaagtggtttgaaggacaagtcaaggatcct 39222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 304 - 406
Target Start/End: Original strand, 39222932 - 39223037
Alignment:
Q  304 gtcaaggaaaaaatatattga---agaaacacaatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatga 400  Q
    |||||||||||||||||||||   ||||| | |||||||||||||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||||||    
T  39222932 gtcaaggaaaaaatatattgatggagaaaaagaatcgggtaaatgttcttattcatcttgtttattgaaaaaatttctttacaactgttcctcttaatga 39223031  T
Q  401 tgatga 406  Q
    ||||||    
T  39223032 tgatga 39223037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 81 - 255
Target Start/End: Complemental strand, 39398027 - 39397852
Alignment:
Q  81 gttaaggagctcagtttaaaaaagaagcaatttgaaagccaagttgagagctttgaatc-aaagagaagcaatttgaaggacggtggaaagaacttgagt 179  Q
    ||||||||||||   ||| |||| ||||| ||||||||||||||||||   ||  |||| ||||| |||||| |||||| |||||||||| |||||||||    
T  39398027 gttaaggagctcgaattacaaaataagcactttgaaagccaagttgaggatttcaaatcaaaagataagcaaattgaagaacggtggaaaaaacttgagt 39397928  T
Q  180 taaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaagga 255  Q
     |||||||||| ||||||||||| ||||  ||||| |  ||||||||||||||||| ||| ||| | |||||||||    
T  39397927 caaaagagaatcagttcaaagtaaaggtgcaggagcttgagttaaaagagaagcaggttgcaggtcgagtcaagga 39397852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 279
Target Start/End: Complemental strand, 39414900 - 39414761
Alignment:
Q  140 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 239  Q
    ||||||||||||||||||| ||| |||||||||||  ||  ||| ||||||||||||||| ||| ||| || ||| |||||||||| ||||| |||||||    
T  39414900 aaagagaagcaatttgaagaacgatggaaagaactcaagacaaatgagaataagttcaaactactggtcaaagagctcaagttaaatgagaaacagtttg 39414801  T
Q  240 gaggacaagtcaaggatcctaagttaaagttgaaaaaatt 279  Q
     ||||||||| ||||||||| ||| |||| || |||||||    
T  39414800 aaggacaagttaaggatcctgagtcaaagctggaaaaatt 39414761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 80 - 258
Target Start/End: Original strand, 39459116 - 39459295
Alignment:
Q  80 ggttaaggagctcagtttaaaaaagaagcaatttgaaagccaagttgagagctttgaatcaaa-gagaagcaatttgaaggacggtggaaagaacttgag 178  Q
    ||||||| |||||| || ||||||||||||||||||||||||  |||||  |||  ||| ||| |||||||||||||||| || | |||||||| | ||     
T  39459116 ggttaagcagctcaattcaaaaaagaagcaatttgaaagccagtttgaggacttcaaattaaaagagaagcaatttgaagaacagcggaaagaattcgat 39459215  T
Q  179 ttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 258  Q
        |||||||||||||||||||||  || || ||| ||||||||||||| ||||| |||| ||||||||||||||||||    
T  39459216 gctgaagagaataagttcaaagtactagtgaaagagctcaagttaaaagacaagcaatttgaaggacaagtcaaggatcc 39459295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 39468264 - 39468379
Alignment:
Q  140 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 239  Q
    ||||| ||||||||||| | |||||| |||||| |  ||| ||||||||||  |||||||||| |||| ||||||||||||||||||||||||||| |||    
T  39468264 aaagataagcaatttgatgaacggtgtaaagaattgaagtcaaaagagaatcggttcaaagtaaaggtgaaggagttcaagttaaaagagaagcagattg 39468363  T
Q  240 gaggacaagtcaagga 255  Q
     |||||||||||||||    
T  39468364 aaggacaagtcaagga 39468379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 337 - 474
Target Start/End: Original strand, 39370254 - 39370394
Alignment:
Q  337 gggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctctta---atgatgatgacaatttttataacccgatctacatagt 433  Q
    ||||||||||||||||||||||||||||||||   | ||||| || ||  ||||| ||||   |||||||||| | |||||||||||||||||| |||||    
T  39370254 gggtaaatgttcttattcatctagtttattgatttaatttcattataattgttccacttaatgatgatgatgatattttttataacccgatctatatagt 39370353  T
Q  434 tgtttaaaaatatttttaatcatgttaatgttttatgtctt 474  Q
    | | |||||| ||| ||||||||||||||||| ||||||||    
T  39370354 tctataaaaacattcttaatcatgttaatgttgtatgtctt 39370394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 39473590 - 39473409
Alignment:
Q  78 cgggttaaggagctcagtttaaaaaagaagcaatttgaaagccaagttgagagctttgaatcaa-agagaagcaatttgaaggacggtggaaagaacttg 176  Q
    |||||||||||||| |  | |||||||||||||||| ||| | | ||||||   ||  |||||| || |||||||||||||| ||| ||||||||||| |    
T  39473590 cgggttaaggagcttaaataaaaaaagaagcaatttaaaaccaaggttgaggaattcaaatcaatagcgaagcaatttgaagaacgatggaaagaactcg 39473491  T
Q  177 agttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaaggatcc 258  Q
    ||| |||||||||||||||||||||||  || |||    |||||||||||||||||||| ||| |||| ||||| |||||||    
T  39473490 agtcaaaagagaataagttcaaagtactagtgaagtcactcaagttaaaagagaagcaggttgaaggagaagtcgaggatcc 39473409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 39137807 - 39137895
Alignment:
Q  140 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 228  Q
    |||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  39137807 aaagagaagcaaattgaagaacggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 39137895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 333 - 470
Target Start/End: Complemental strand, 39381412 - 39381275
Alignment:
Q  333 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatag 432  Q
    |||| ||||||||||||||||||| ||||||| ||||||| ||||| | ||   ||| || ||||||||| ||| | ||||  ||||  ||||||||||     
T  39381412 aatctggtaaatgttcttattcatatagtttactgaaagaatttcatttcagttgtttcttttaatgatgttgatacttttattaacttgatctacataa 39381313  T
Q  433 ttgtttaaaaatatttttaatcatgttaatgttttatg 470  Q
    ||  |||||||||||||||||| |||||||||| ||||    
T  39381312 ttcattaaaaatatttttaatcgtgttaatgttgtatg 39381275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 144 - 259
Target Start/End: Complemental strand, 39381625 - 39381510
Alignment:
Q  144 agaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggagg 243  Q
    ||||| ||||||||| |||   ||||||||  || | |||||||||| ||||||||||| || | || ||| |||||||||||||||||||||||| | |    
T  39381625 agaagaaatttgaagaacgaatgaaagaacacgaatcaaaagagaatgagttcaaagtaaagatgaatgagctcaagttaaaagagaagcagtttgaaag 39381526  T
Q  244 acaagtcaaggatcct 259  Q
    ||||| ||||||||||    
T  39381525 acaagacaaggatcct 39381510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 39421947 - 39421832
Alignment:
Q  143 gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttggag 242  Q
    |||||| ||||||||| ||  |||||||||||  ||| |||||||||||||||||||||||  || || ||| |||| |||||||| ||||  |||||||    
T  39421947 gagaagaaatttgaagaacaatggaaagaactcaagtcaaaagagaataagttcaaagtactagtgaaagagctcaaattaaaagacaagcgatttggag 39421848  T
Q  243 gacaagtcaaggatcc 258  Q
     || ||||||||||||    
T  39421847 cactagtcaaggatcc 39421832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 39152448 - 39152561
Alignment:
Q  80 ggttaaggagctcagtttaaaaaagaagcaatttgaaagccaagttgagagctttgaatc-aaagagaagcaatttgaaggacggtggaaagaacttgag 178  Q
    |||||||||||| |  | |||||||||| ||||||||| ||| ||||||  |||  || | ||||||||||||||||||  |||||||||||| || |||    
T  39152448 ggttaaggagcttaaatcaaaaaagaagaaatttgaaatccaggttgaggacttcaaaacaaaagagaagcaatttgaaaaacggtggaaagagctcgag 39152547  T
Q  179 ttaaaagagaataa 192  Q
    | ||||||||||||    
T  39152548 tcaaaagagaataa 39152561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 39421733 - 39421688
Alignment:
Q  333 aatcgggtaaatgttcttattcatctagtttattgaaagagtttca 378  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||    
T  39421733 aatctggtaaatgttcttattcatctaatttattgaaagagtttca 39421688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 39494559 - 39494461
Alignment:
Q  141 aagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaagagaagcagtttg 239  Q
    ||||||| ||||||||||||||  ||||||| |  |||| |||||| || |||||||||| ||| || |||||| | |||  |||||||||||||||||    
T  39494559 aagagaaacaatttgaaggacgagggaaagagccagagtcaaaagacaagaagttcaaagcacacgtgaaggagctgaagccaaaagagaagcagtttg 39494461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 39468448 - 39468485
Alignment:
Q  333 aatcgggtaaatgttcttattcatctagtttattgaaa 370  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39468448 aatctggtaaatgttcttattcatctagtttattgaaa 39468485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Original strand, 39223101 - 39223154
Alignment:
Q  412 tttataacccgatctacatagttgtttaaaaatatttttaatcatgttaatgtt 465  Q
    |||| |||| ||||||| || || ||||| ||||||||||||||||||||||||    
T  39223101 tttacaacctgatctacttaattctttaagaatatttttaatcatgttaatgtt 39223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 39459387 - 39459431
Alignment:
Q  326 gaaacacaatcgggtaaatgttcttattcatctagtttattgaaa 370  Q
    |||||| |||||||||| ||||||||||||| ||| |||||||||    
T  39459387 gaaacagaatcgggtaagtgttcttattcatttagcttattgaaa 39459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 16113181 - 16113339
Alignment:
Q  98 aaaaaagaagcaatttgaaagccaagttgagagctttgaatcaaa-gagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttc 196  Q
    |||||| ||||| || |||||||||||||||   ||  ||||||| || ||||||||||||| ||||||||||||||| || | |||||||||| |||||    
T  16113181 aaaaaataagcatttggaaagccaagttgagtatttcaaatcaaacgataagcaatttgaagaacggtggaaagaactcgaatcaaaagagaatcagttc 16113280  T
Q  197 aaagtacaggtaaaggagttcaagttaaaagagaagcagtttggaggacaagtcaagga 255  Q
    |||||| |||  |||||| |||||||||||||||||||| ||| || ||||||||||||    
T  16113281 aaagtaaaggagaaggagctcaagttaaaagagaagcagattgaagtacaagtcaagga 16113339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 16113441 - 16113478
Alignment:
Q  333 aatcgggtaaatgttcttattcatctagtttattgaaa 370  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  16113441 aatcgggtaagtgttctcattcatctagtttattgaaa 16113478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 19807757 - 19807845
Alignment:
Q  140 aaagagaagcaatttgaaggacggtggaaagaacttgagttaaaagagaataagttcaaagtacaggtaaaggagttcaagttaaaaga 228  Q
    |||||||| ||| |||||| | ||||||||||||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||    
T  19807757 aaagagaatcaaattgaagaaaggtggaaagaactcgagtcaaaagagaataagttcaaagtactggtcaaagagctcaagttaaaaga 19807845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 430
Target Start/End: Original strand, 19807963 - 19808059
Alignment:
Q  334 atcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacat 430  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| | || | ||| || || |||||| ||| | |||| |||||| |||||||||    
T  19807963 atcgggtaaaagttcttattcatctagtttatagaaggagtttcatttcagctgtttctttttatgatgttgatatttttaataacctgatctacat 19808059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 474
Target Start/End: Original strand, 33561135 - 33561281
Alignment:
Q  333 aatcgggtaaatgttcttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaattt----ttataacccgatctac 428  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| | || ||  |||||||| | |||||||||  ||||    ||||| || |||||||    
T  33561135 aatccggtaaatgttcttcttcatctagtttattgaaagaattttattataagtgttcctctcagtgatgatgatgattttttgttatatcctgatctac 33561234  T
Q  429 atagttgtttaaaaatatttttaatcatgttaatgttt-tatgtctt 474  Q
     || |  |||||| | |||||||||||||||||||||| ||||||||    
T  33561235 ttaatcctttaaacacatttttaatcatgttaatgtttgtatgtctt 33561281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 17059602 - 17059642
Alignment:
Q  338 ggtaaatgttcttattcatctagtttattgaaagagtttca 378  Q
    |||||||||| |||||||||||||||||| ||||| |||||    
T  17059602 ggtaaatgttgttattcatctagtttattaaaagaatttca 17059642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 464
Target Start/End: Original strand, 45342187 - 45342305
Alignment:
Q  349 ttattcatctagtttattgaaagagtttcaatacaacggttcctcttaatgatgatgacaatttttataacccgatctacatagttgtttaaaa---ata 445  Q
    |||||||||||||||||||||||| ||||| | ||||  || || ||  ||||| ||| | |||| |||||| |||||||||| |  |||||||   |||    
T  45342187 ttattcatctagtttattgaaagaatttcatttcaactatttcttttgttgatgttgatatttttaataacctgatctacatattcttttaaaaaatata 45342286  T
Q  446 tttttaatcatgttaatgt 464  Q
    | |||||| ||||||||||    
T  45342287 tgtttaatgatgttaatgt 45342305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University