View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_51 (Length: 501)
Name: NF1345_low_51
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_51 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 53 - 501
Target Start/End: Complemental strand, 42095228 - 42094764
Alignment:
| Q |
53 |
gtggatatttttcgaaggggaaggggcactcataatctcaagttcgactaatgttgtttcaattttactattttcttctcacacaatttatactcagcan |
152 |
Q |
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| T |
42095228 |
gtggatatttttcgaaggggaaggggcactcataatctcaagttcgactaatgttgtttcaattttactatttccttctcacacaatttatactcagcat |
42095129 |
T |
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| Q |
153 |
nnnnnnnnngtttctttaggaactgtaacttctcttatagttagtg--actaggtttgagttcatatgttgaagatgatgatggagagtgaagctttgat |
250 |
Q |
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| T |
42095128 |
attttttttgtttctttaggaactgtaacttctcttatagttagtgtgactaggtttgagttcatatgttgaagatgatgatggagagtgaagctttgat |
42095029 |
T |
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| Q |
251 |
gagaaggtaatgctttgacaagtttctttccccttcatgtttttcacttttaactctttccttttt--------------gaaacattgtgtttgcatca |
336 |
Q |
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| T |
42095028 |
gagaaggtgatgctttgacaagtttctttccccttcatgtttttcacttttaactctttcctttttctgtcctgttttttgaaacattgtgtttgcatca |
42094929 |
T |
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| Q |
337 |
ggcttgccttgatttgaagctgtatatattttgttgttttccacttctttgtctatagtacatcctctgtcgctgatatttgttgtagtatcttatcttg |
436 |
Q |
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| T |
42094928 |
ggcttgccttgatttgaagctgtatatattttgttgttttccacttctttgtctatagtacatcctctgtcgctgatatttgttgtagtatcttatcttg |
42094829 |
T |
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| Q |
437 |
cttgacaacatgtaattacctcttaattatttaacatatgatattggtttttgaaatgaacatat |
501 |
Q |
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| T |
42094828 |
cttgataacatgtaattacctcttaattatttaacatatgatattggtttttgaaatgaacatat |
42094764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 48909302 - 48909189
Alignment:
| Q |
200 |
ctaggtttgagttcatatgttgaagatgatgatggagagtgaagctttgatgagaaggtaatgctttgacaagtttctttccccttcatgtttttcactt |
299 |
Q |
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||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||| | | ||||||| |||||||||||||||| | |||||||| |
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| T |
48909302 |
ctaggcttgagttcaaatgttgaagatgatg---gagagtgaggctttgatgagaagatgaccctttgacgggtttctttccccttcagctatttcactt |
48909206 |
T |
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| Q |
300 |
ttaactctttccttttt |
316 |
Q |
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| T |
48909205 |
ttttctatttccttttt |
48909189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 366 - 430
Target Start/End: Original strand, 6957875 - 6957939
Alignment:
| Q |
366 |
tttgttgttttccacttctttgtctatagtacatcctctgtcgctgatatttgttgtagtatctt |
430 |
Q |
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| T |
6957875 |
tttgttgtttttcacttctttgtctatagtacatcatgtgttgatgatatttgttgttgtatctt |
6957939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 4352122 - 4352183
Alignment:
| Q |
372 |
gttttccacttctttgtctatagtacatcctc---tgtcgctgatatttgttgtagtatctt |
430 |
Q |
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| T |
4352122 |
gtttttcacttctttgtctatagtacctcctcctatgttgctaatatttgttgtagtatctt |
4352183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 35361100 - 35361044
Alignment:
| Q |
205 |
tttgagttcatatgttgaagatgatgatggagagtgaagctttgatgagaaggtaatgct |
264 |
Q |
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| T |
35361100 |
tttgagttcataggttgaagatgatga---agagtgagactttgatgagaaggtgatgct |
35361044 |
T |
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