View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_52 (Length: 494)
Name: NF1345_low_52
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 193 - 479
Target Start/End: Original strand, 21142963 - 21143241
Alignment:
| Q |
193 |
aggattataggagtcaactaatgattaatatcttctnnnnnnnctaatgatgaatatatttaatataattaaaatactattgattgaagttgacagcttt |
292 |
Q |
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| T |
21142963 |
aggattataggagtcaactaatgattaatatcttctaaaaaaactaatgatgaatatttttaatataattaaa----tattgattgaagttgaccgcttt |
21143058 |
T |
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| Q |
293 |
caattatatatacaccatattaaataaattattccaaatattaaaagctgaaaagtggtgaagaccataaccttaacccattcaaaactctttaaattct |
392 |
Q |
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| T |
21143059 |
caattata----caccatattaaataaattattccaaatattaaaagctgaaaagtggtgaagaccataaccttaacccattcaaaactctttaaattct |
21143154 |
T |
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| Q |
393 |
acgttgtattaccaatgctataaaaacattggcattgcttcatatttttcacaaacaacatgggattctctaaaacctctctatctc |
479 |
Q |
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| T |
21143155 |
acgttgtattaccaatgctataaaaacattggcattgcttcatatttttcacaaacaacatgggattctctaaaacctctctatctc |
21143241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 21142798 - 21142876
Alignment:
| Q |
30 |
tcactatcaataccggattttgcagatgaaaactaatacct-aaaaaataggattttacagataatcattctcaatttg |
107 |
Q |
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| T |
21142798 |
tcactatcaataccggattttgcagatgaaaactaatacctaaaaaaataggattttacagataatcattctcaatttg |
21142876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 450
Target Start/End: Original strand, 21123238 - 21123282
Alignment:
| Q |
406 |
aatgctataaaaacattggcattgcttcatatttttcacaaacaa |
450 |
Q |
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| T |
21123238 |
aatgctataaaaacattcccattgcttcacttttttcacaaacaa |
21123282 |
T |
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