View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_54 (Length: 493)
Name: NF1345_low_54
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 43 - 333
Target Start/End: Original strand, 20285342 - 20285632
Alignment:
| Q |
43 |
ttaggacgcgactagacttctataatatgatgtatcaatgtttgcatctcgattaaaagagatttctacatttaggtaaatgctagacattgcgaaaacc |
142 |
Q |
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| T |
20285342 |
ttaggacgcgactaaacttctaaaatatgatgtatcaatgtttgcatctcggttaaaagagatttctacatttaggtaaatgctagatattgcgaaaacc |
20285441 |
T |
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| Q |
143 |
ttgaatgtattcaaatttgatgtgaaggctctatgcaaagctgtaataagggaatggaatgatctatgtcggtccaaatggagtatatgaataaattaag |
242 |
Q |
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| T |
20285442 |
ttgaatgtattcaaatttgatgtgaaggctctatgcaaagctgtaatcagggaatggaatgatctatgtcggtccaaatggagtatatgaat-aattaag |
20285540 |
T |
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| Q |
243 |
-ttatagttatagttttagtagccgactttatgtgattgtggatcttttgattttttattgttcttctacttctcacttagatgaaccgata |
333 |
Q |
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| T |
20285541 |
tttatagctatagttttagtagccgactttatgtgaatgtggatcttttgattttttattgttcttctacctctgacttagatgaaccgata |
20285632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 207 - 331
Target Start/End: Complemental strand, 27256521 - 27256398
Alignment:
| Q |
207 |
tatgtcggtccaaatggagtatatgaataaattaagttatagttatagttttagtagccgactttatgtgattgtggatcttttgattttttattgttct |
306 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27256521 |
tatgtccgtccaaatggagtatatgaataa-ttaagttatggctatagttttagtagccgactttatgtgattgtggatcttttgattttttattgtttt |
27256423 |
T |
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| Q |
307 |
tctacttctcacttagatgaaccga |
331 |
Q |
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| T |
27256422 |
tctacttctgacttagatgaaccga |
27256398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 308 - 394
Target Start/End: Original strand, 20285633 - 20285719
Alignment:
| Q |
308 |
ctacttctcacttagatgaaccgatatagtgacacaactttgtctttcttgctgcgcctgccttgtttgaatatttgacccacatat |
394 |
Q |
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| T |
20285633 |
ctacttctgactcagatgaaccgaaatagtgatacaactttgtctttcttgctgcgcctgccttgtttgaataattgacccacatat |
20285719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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