View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_6 (Length: 832)
Name: NF1345_low_6
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 743; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 8 - 803
Target Start/End: Complemental strand, 31399372 - 31398576
Alignment:
| Q |
8 |
tatcataggagagcataggtcactcattcctgcaaattgtaaaatgataaccagaaatttacattagtttcaaattctggttacatttagtttctcataa |
107 |
Q |
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| T |
31399372 |
tatcataggagagcataggtcactcattcctgcaaattgtaaaatgataaccagaaatttacattagtttcaaattctggttacatttagtttctcataa |
31399273 |
T |
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| Q |
108 |
gattacaagtggatcataattaaaattaatctatgaataagtcaatgttttaaattgcggtatgcaactgcagtatatcagggtttaaaagatatcaaca |
207 |
Q |
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| T |
31399272 |
gattacaagtggatcataattaaaattaatctatgaataagtcaaggttttaaattgcggtatgcaactgcagtatatcagggtttaaaagatatcaaca |
31399173 |
T |
|
| Q |
208 |
accacaattatcactacatctatatacattttctgctattttaagtcaatgaccaagtattagtcaatgtcgaaaagaggcaacnnnnnnnnnntta-ca |
306 |
Q |
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| T |
31399172 |
accacaattatcattacatctacatacattttctgctattttaagtcaatgaccaagtattagtcaatgtcgaaaagaggcaacaaaaaaaaaattaaca |
31399073 |
T |
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| Q |
307 |
ttcaaatgaatcacatatctaatgactaaccttgaccatagccaacatcattatctatcctagcataaacagcaagaatatcccataattttgacaaatt |
406 |
Q |
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| T |
31399072 |
ttcaaatgaatcacatatctaatgactaaccttgaccatagccaacatcattatctatcctagcataaacagcaagaatatcccataattttgacaaatt |
31398973 |
T |
|
| Q |
407 |
ctctttcttctcataaaaaaccagtgtcctatcggtacgaatcacgtcaagacctgaaatgtgtttatataagaaaaagaaagtaagataattcaccatg |
506 |
Q |
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| T |
31398972 |
ctctttcttctcataaaaaaccagtgtcctatcggtacgaatcacgtcaagacctgaaatgtgtttatataagaaaaagaaagtaagataattcaccatg |
31398873 |
T |
|
| Q |
507 |
tgagttattttatgatgatagaattttacatttcttcatttgaaaaacatccaatagtatacatattatagtgcattgagaacctaaaaatatttcacaa |
606 |
Q |
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| T |
31398872 |
tgagttattttatgatgatagaattttacatttcttcatttgaaaaacatccaatagtatacatattatagtgcattgagaacctaaaaatatttcacaa |
31398773 |
T |
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| Q |
607 |
acctatttgatgtagagttaacatccattgaattacttttttgtctgtcaccttctttgctgtattattagggcttggagcacctatttcttgaggaggt |
706 |
Q |
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| T |
31398772 |
acctatttgatgtagagttaacatccattgaattacttttttgtctgtcaccttctttgctgtattattagggcttggagcacctacttcttgaggaggt |
31398673 |
T |
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| Q |
707 |
acaatcactccattttctggattattttctaacaaaaccaatggatcttgaaccggtacaccatcgtcggtaactacaggtgcagtgataaatctac |
803 |
Q |
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| T |
31398672 |
acaatcactccattttctggattattttctaacaaaaccaatggatcttgaaccggtacaccatcgtcggtaactacaggtgcagtgataaatctac |
31398576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 24562949 - 24562981
Alignment:
| Q |
152 |
atgttttaaattgcggtatgcaactgcagtata |
184 |
Q |
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| T |
24562949 |
atgttttaaattgcggtatgcaactgcagtata |
24562981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 334 - 465
Target Start/End: Original strand, 34941494 - 34941625
Alignment:
| Q |
334 |
aaccttgaccatagccaacatcattatctatcctagcataaacagcaagaatatcccataattttgacaaattctctttcttctcataaaaaaccagtgt |
433 |
Q |
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| T |
34941494 |
aaccttgaccgtatccaacttctttatctatccaagcataaaccgcaagaatatcccataattttgacaagttttcttgtttctcataaaaaaccaatgt |
34941593 |
T |
|
| Q |
434 |
cctatcggtacgaatcacgtcaagacctgaaa |
465 |
Q |
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| T |
34941594 |
tctatcagtgcgaaccacgtcaagacctgaaa |
34941625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 600 - 657
Target Start/End: Original strand, 34941718 - 34941775
Alignment:
| Q |
600 |
ttcacaaacctatttgatgtagagttaacatccattgaattacttttttgtctgtcac |
657 |
Q |
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| T |
34941718 |
ttcacaaacctatttgatggagagttaacatccactggattagtttcttgtctgtcac |
34941775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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