View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_78 (Length: 455)
Name: NF1345_low_78
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 28 - 409
Target Start/End: Complemental strand, 6082282 - 6081918
Alignment:
| Q |
28 |
catattttggtcaaggaaaaaattatatactgctnnnnnnnnngagtctaaaattccaaatggtttgatcatgactacaaatacaataacaactttaacc |
127 |
Q |
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| T |
6082282 |
catattttggtcaaggaaaaaattatatactgctaaaaaaaga-agtctaaaattccaaatggtttgatcatggctacaaatacaataacaactttaacc |
6082184 |
T |
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| Q |
128 |
atataataattaaatcttgtaatcaaataaatattacaatgtaactataatcacaaggaaaatatttaccttaacaaaataatttattccatacttacat |
227 |
Q |
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| T |
6082183 |
atataataattaaatcttgtaatcaaataaatattacaatgtaactataatcacaaggaaaatatttacctt----------------ccatacttacat |
6082100 |
T |
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| Q |
228 |
gaccttctaagaatgaagttgaagattcataagtttaggtgcaagaaatggttagttagaacatagaagttgagaaagtaaagagaacaatgaatatgat |
327 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6082099 |
gaccttctaagaatgaagttgaaggttgataagtttaggtgcaagaaatggttagttagaacatagaagttgagaaagtgaagagaacaatgaatatgat |
6082000 |
T |
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| Q |
328 |
aacgtgttgtgcttgatatctcaccgacgctctgagttcaaggaaaatgactcacactcctcaactaacaactatctctgct |
409 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6081999 |
aacgtgttgtgtttgatatctcaccgacgctctgagttcaaggaaaatgactcacactcctcaactaacaactatctctgct |
6081918 |
T |
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