View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_80 (Length: 453)
Name: NF1345_low_80
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 28 - 441
Target Start/End: Original strand, 35676109 - 35676522
Alignment:
| Q |
28 |
cacttagtttacaagaaaacttggacaaagaaaacccattaagctgtgtgtttagggatgccatttttgaaggttgaatttgagcaaccaaaaagtacag |
127 |
Q |
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| T |
35676109 |
cacttagtttacaagaaaacttggacaaagaaaacccattaagctgtgtgtttagggatgccatttttgaaggttgaatttgagcaaccaaaaagtacag |
35676208 |
T |
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| Q |
128 |
atttttcaattctattgcttaatgctgtagtcttatatgagtaaaaaggtaattctaactgaaaatttcaaaaagagacaactttaaatttgcaaagata |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35676209 |
atttttcaattctattgcttaatgctgtagtcttatatgagtaaaaaggtaattctaactgaaaatttcaaaaagagacaactttgaatttgcaaagatg |
35676308 |
T |
|
| Q |
228 |
gagatgaagatggtgaatattannnnnnnnnnnnnnnnatcattaatnnnnnnnnnnnntttttactttcaatttagtctcaatgattgacacatcatca |
327 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||||||| |
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| T |
35676309 |
gagatgaagatggtgaatattatttttttggtttttttatcattaataaaaaataattttttttactttcaatttagtccctatgattgacacatcatca |
35676408 |
T |
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| Q |
328 |
ttaataaaaatatattgccatttctttttgtacgacggatctctaaagttatcaagttgggctaaccaatgatggatcaggaagctcatttaacctctat |
427 |
Q |
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|||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |
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| T |
35676409 |
ttaataaaaatatattgccatttccttttgtaggagggatctctaaagttatcaagttgggctaaccaatgatagatcatgaagctcatataacctctat |
35676508 |
T |
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| Q |
428 |
aaatcttagagtat |
441 |
Q |
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| T |
35676509 |
aaatcttagagtat |
35676522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 74 - 236
Target Start/End: Original strand, 43539533 - 43539696
Alignment:
| Q |
74 |
tgtgtttagggatgccatttttgaaggttgaatttgagcaaccaaaaagtacagatttttcaattctattgcttaatgctgtagtcttatatgagtaaaa |
173 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
43539533 |
tgtgtttagggatgccatttt-gaaggttgaatttgagcaaccaaaaagtacagatttttcaattctattgcctaatgttgtagtcttatatgagtaaaa |
43539631 |
T |
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| Q |
174 |
aggtaattctaactgaaaatttcaaaaagag--acaactttaaatttgcaaagatagagatgaag |
236 |
Q |
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|||||||| ||| |||||||||||||||||| |||||||| || |||||||||||||||||||| |
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| T |
43539632 |
aggtaattataattgaaaatttcaaaaagagacacaactttgaaattgcaaagatagagatgaag |
43539696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 29979902 - 29979822
Alignment:
| Q |
153 |
tgtagtcttatatgagtaaaaaggtaattctaactgaaaatttcaaaaa--gagacaactttaaatttgcaaagatagaga |
231 |
Q |
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| T |
29979902 |
tgtagtcttatatgagtaaaaaggtaattctaattgaaaatttcaaaaagagagacaactttgaaattgcaaagatagaga |
29979822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 323
Target Start/End: Original strand, 8484153 - 8484189
Alignment:
| Q |
287 |
tttttactttcaatttagtctcaatgattgacacatc |
323 |
Q |
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|||||||||||||||||||| | |||||||||||||| |
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| T |
8484153 |
tttttactttcaatttagtccctatgattgacacatc |
8484189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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