View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_82 (Length: 450)
Name: NF1345_low_82
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_82 |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 25996628 - 25996227
Alignment:
| Q |
11 |
acaatatcaagatttgcatataaaacttcctcaagaaaattttgagttcca----aaacttccatcttctacctaattaaatcacatcaaacacttatac |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25996628 |
acaatatcaagatttgcatataaaacttcctcaagaaaatttcgagttccatacaaaacttccatcttctacctaattaaatcacatcaaacacttatac |
25996529 |
T |
|
| Q |
107 |
aaccctagcacgtaaacaaaactcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25996528 |
aaccctagcacgtaaacaaaactcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcctttttcatgcaaattat |
25996429 |
T |
|
| Q |
207 |
caagcaagtgatatgcacaaaatttaaagaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaatta |
306 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25996428 |
caagcaagtgatatgcacaaaatttatagaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaatta |
25996329 |
T |
|
| Q |
307 |
tcaaacaagtgatgtgcataaatcttaatcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacacacgtacatacaa |
406 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25996328 |
tcaaacaagtgatgtgcataaaacttaatcttttgttttgctccaaaatgaaacaaacttagaacaataaataattaaatacaaacacacgtacatacaa |
25996229 |
T |
|
| Q |
407 |
ag |
408 |
Q |
| |
|
|| |
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|
| T |
25996228 |
ag |
25996227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 26096010 - 26095712
Alignment:
| Q |
11 |
acaatatcaagatttgcatataaaacttcctcaagaaaattttgagttcca----aaacttccatcttctacctaattaaatcacatcaaacacttatac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26096010 |
acaatatcaagatttgcatataaaacttcctcaagaaaatttcaagttccatacaaaacttccatcttctacctaattaaatcacatcaaacacgtatac |
26095911 |
T |
|
| Q |
107 |
aaccctagcacgtaaacaaaactcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattat |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26095910 |
aaccctagcacgtaaacaaaactca--gaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcctttttcatgcaaattat |
26095813 |
T |
|
| Q |
207 |
caagcaagtgatatgcacaaaatttaaagaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaatta |
306 |
Q |
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|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26095812 |
caagcaagtgatatgcacaaaatttatacaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaatta |
26095713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 26095712 - 26095649
Alignment:
| Q |
345 |
tgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacacacgtacatacaaag |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26095712 |
tgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacaaacgtacatacaaag |
26095649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 324
Target Start/End: Complemental strand, 26095886 - 26095796
Alignment:
| Q |
234 |
agaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatcaaacaagtgatgtgca |
324 |
Q |
| |
|
|||||||||| |||| ||| |||||| ||||||||||| ||||||||||| |||| ||||||| ||||||||||| |||||||| |||| |
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| T |
26095886 |
agaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcctttttcatgcaaattatcaagcaagtgatatgca |
26095796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 408
Target Start/End: Complemental strand, 26100 - 25717
Alignment:
| Q |
11 |
acaatatcaagatttgcatataaaacttcctcaagaaaattttgagttcca----aaacttccatcttctacctaattaaatcacatcaaacacttatac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26100 |
acaatatcaagatttgcatataaaacttcctcaagaaaatttcgagttccatacaaaacttccatcttctacctaattaaatcacatcaaacacttatac |
26001 |
T |
|
| Q |
107 |
aaccctagcacgtaaacaaaactcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattat |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26000 |
aaccctagcacgtaaacaaaactcttagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcctttttcatgcaaattat |
25901 |
T |
|
| Q |
207 |
caagcaagtgatatgcacaaaatttaaagaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaatta |
306 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |
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|
| T |
25900 |
caagcaagtgatatgcacaaaatttatagaaatagaaacatttacaattaaaaccaaagtaattgttaatgattcataacatctcttttcattcaaatta |
25801 |
T |
|
| Q |
307 |
tcaaacaagtgatgtgcataaatcttaatcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacacacgtacatacaa |
406 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25800 |
tcaaa------------------cttaatcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaatacaaacacacgtacatacaa |
25719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 234 - 389
Target Start/End: Complemental strand, 29901242 - 29901088
Alignment:
| Q |
234 |
agaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatcaaacaagtgatgtgcataaatctta |
333 |
Q |
| |
|
|||||||||| |||| ||| ||||| ||| ||||||| |||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||| | || |
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|
| T |
29901242 |
agaaatagaagcattaacagttaaac-caaggtaattgttaatgactcattgcatctgttttcatacaaattatcaaacaagtgatgtgcataaaacata |
29901144 |
T |
|
| Q |
334 |
atcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaataca |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29901143 |
atcttttgttttgctccaaaatgaaacaaacttagaaccaaaaataattaaataca |
29901088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 29901248 - 29901148
Alignment:
| Q |
127 |
actcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattatcaagcaagtgatatgcacaa |
226 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| |||| || |
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|
| T |
29901248 |
actcatagaaatagaagcattaacagttaaa-ccaaggtaattgttaatgactcattgcatctgttttcatacaaattatcaaacaagtgatgtgcataa |
29901150 |
T |
|
| Q |
227 |
aa |
228 |
Q |
| |
|
|| |
|
|
| T |
29901149 |
aa |
29901148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 234 - 389
Target Start/End: Original strand, 14713696 - 14713850
Alignment:
| Q |
234 |
agaaatagaaacatttacaattaaaaacaaagtaattggtaatgattcatatcatctcttttcattcaaattatcaaacaagtgatgtgcataaatctta |
333 |
Q |
| |
|
|||||||||| |||| ||| ||||| ||| ||||||| |||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||| | || |
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|
| T |
14713696 |
agaaatagaagcattaacagttaaac-caaggtaattgttaatgactcattgcatctgttttcatccaaattatcaaacaagtgatgtgcataaaacata |
14713794 |
T |
|
| Q |
334 |
atcttttgttttgctccaaaatgaaacaaacttagaaccataaataattaaataca |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14713795 |
atcttttgttttgctccaaaatgaaacaaacttagaaccaaaaataattaaataca |
14713850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 14713690 - 14713790
Alignment:
| Q |
127 |
actcatagaaatagaaccattaacagttaaaaccaaagtaattgttaatgattcatcgcatcccttttcatgcaaattatcaagcaagtgatatgcacaa |
226 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| ||||| ||||||| ||||||||||| |||||||| |||| || |
|
|
| T |
14713690 |
actcatagaaatagaagcattaacagttaaa-ccaaggtaattgttaatgactcattgcatctgttttcatccaaattatcaaacaagtgatgtgcataa |
14713788 |
T |
|
| Q |
227 |
aa |
228 |
Q |
| |
|
|| |
|
|
| T |
14713789 |
aa |
14713790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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