View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_84 (Length: 447)
Name: NF1345_low_84
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_84 |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 26 - 438
Target Start/End: Original strand, 18944185 - 18944597
Alignment:
| Q |
26 |
gcttatgtcagaggctcaagtgctaagttaccatggaatagctatgtccctccaacaagatctttcatcatatggtgacttgctcaaaggagattaccaa |
125 |
Q |
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| T |
18944185 |
gcttatgtcagaggctcaagtgctaagttaccatggaatagctatgtccctccaacaagatctttcatcatatggtgacttgctcaaaggagattaccaa |
18944284 |
T |
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| Q |
126 |
cttatgaaaacctcaaagaaataggatgagctattgtgtcagtatgttgtttttgcaggaagaatgaggaaacgttaatcaacacattgatatatacaac |
225 |
Q |
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| T |
18944285 |
cttatgaaaacctcaaaaaaataggatgagctattgtgtcagtatgttgtttttgcaggaagaatgaggaaacattaatcaacacattgatatatacaac |
18944384 |
T |
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| Q |
226 |
tactagttggcatggctctatcatgggatgcactggcagatggagtccttatgtgcaacagatgatgacttcttctattctacacattatttggagaatt |
325 |
Q |
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| T |
18944385 |
tactagttggcatggctctatcatgggatgcactggcagatggagtccttatgtgcaacagatgatgacttcttctattctacacattatttggagtatt |
18944484 |
T |
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| Q |
326 |
tggatagaaagaaattgcaaacaatttcaaaacaaattagtctcaatttcatcactgctatcggaggttttgtgcaaaacattggcaatgctattgcatc |
425 |
Q |
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| T |
18944485 |
tggatagaaagaaattgcaaacaatttcgaaacaaattagtctcaatttcatcactgccatcggaggttttgtgcaaaacattggcaatgctattgcatc |
18944584 |
T |
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| Q |
426 |
acgggagaattat |
438 |
Q |
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| T |
18944585 |
actggagaattat |
18944597 |
T |
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