View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1345_low_9 (Length: 799)

Name: NF1345_low_9
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1345_low_9
NF1345_low_9
[»] chr2 (2 HSPs)
chr2 (5-799)||(23689303-23690097)
chr2 (467-590)||(28386890-28387013)
[»] scaffold0029 (4 HSPs)
scaffold0029 (374-647)||(76063-76337)
scaffold0029 (451-648)||(87866-88063)
scaffold0029 (718-796)||(88646-88724)
scaffold0029 (691-754)||(77069-77131)
[»] chr7 (7 HSPs)
chr7 (451-648)||(15941798-15941995)
chr7 (451-648)||(15933455-15933652)
chr7 (451-648)||(7159499-7159696)
chr7 (693-796)||(15932704-15932807)
chr7 (693-796)||(15941046-15941149)
chr7 (674-793)||(47921834-47921953)
chr7 (691-796)||(7157703-7157807)
[»] chr4 (9 HSPs)
chr4 (451-648)||(11164894-11165091)
chr4 (374-641)||(16636416-16636677)
chr4 (672-796)||(11164135-11164259)
chr4 (451-648)||(14234371-14234569)
chr4 (451-590)||(14224335-14224474)
chr4 (458-634)||(27079603-27079783)
chr4 (693-796)||(16635665-16635768)
chr4 (691-796)||(50881660-50881767)
chr4 (452-642)||(50879229-50879419)
[»] chr3 (6 HSPs)
chr3 (451-648)||(11176887-11177084)
chr3 (374-642)||(23047354-23047606)
chr3 (451-648)||(11296201-11296398)
chr3 (672-796)||(11177684-11177808)
chr3 (676-782)||(23046611-23046717)
chr3 (457-517)||(3779728-3779788)
[»] chr5 (9 HSPs)
chr5 (451-634)||(34657876-34658059)
chr5 (450-656)||(19184103-19184309)
chr5 (451-633)||(31233042-31233224)
chr5 (451-656)||(20933377-20933583)
chr5 (451-584)||(20928761-20928894)
chr5 (689-796)||(20934265-20934372)
chr5 (674-796)||(34657124-34657245)
chr5 (701-792)||(19183839-19183930)
chr5 (672-753)||(31232313-31232393)
[»] scaffold0059 (2 HSPs)
scaffold0059 (360-648)||(38194-38483)
scaffold0059 (674-796)||(39116-39238)
[»] chr6 (1 HSPs)
chr6 (375-634)||(7960317-7960577)
[»] scaffold0334 (2 HSPs)
scaffold0334 (451-634)||(16991-17174)
scaffold0334 (672-796)||(16159-16283)
[»] scaffold0453 (2 HSPs)
scaffold0453 (451-648)||(12335-12532)
scaffold0453 (691-796)||(9634-9739)
[»] chr1 (6 HSPs)
chr1 (451-648)||(18487095-18487293)
chr1 (458-648)||(18477006-18477197)
chr1 (693-744)||(7589080-7589131)
chr1 (544-642)||(7588483-7588581)
chr1 (718-796)||(17951075-17951153)
chr1 (373-482)||(9981176-9981285)
[»] scaffold0010 (1 HSPs)
scaffold0010 (451-584)||(116881-117014)
[»] scaffold0177 (2 HSPs)
scaffold0177 (451-590)||(33053-33192)
scaffold0177 (722-776)||(32430-32484)
[»] scaffold0001 (1 HSPs)
scaffold0001 (458-648)||(186919-187110)
[»] chr8 (2 HSPs)
chr8 (689-796)||(19901794-19901901)
chr8 (451-589)||(19900908-19901046)
[»] scaffold1407 (2 HSPs)
scaffold1407 (451-634)||(640-823)
scaffold1407 (693-776)||(1332-1415)
[»] scaffold0226 (2 HSPs)
scaffold0226 (458-648)||(4364-4555)
scaffold0226 (689-796)||(3565-3672)
[»] scaffold0035 (2 HSPs)
scaffold0035 (451-590)||(87144-87283)
scaffold0035 (451-590)||(96838-96977)
[»] scaffold1661 (1 HSPs)
scaffold1661 (718-796)||(156-234)
[»] scaffold0158 (1 HSPs)
scaffold0158 (479-648)||(35789-35959)
[»] scaffold0513 (1 HSPs)
scaffold0513 (451-538)||(5931-6018)
[»] scaffold0202 (1 HSPs)
scaffold0202 (360-477)||(8415-8532)
[»] scaffold0028 (1 HSPs)
scaffold0028 (216-278)||(119399-119461)


Alignment Details
Target: chr2 (Bit Score: 707; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 707; E-Value: 0
Query Start/End: Original strand, 5 - 799
Target Start/End: Complemental strand, 23690097 - 23689303
Alignment:
Q  5 tctccaacaaaatatgttctccttctcctaaactggtcttaccattaccattcaatgtctacataaataaaccagaagttgcagcagtgtccagagataa 104  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  23690097 tctccaaaaaaatctgttctccttctcctaaacaggtcttaccattaccattcaatatctacacaaataaaccagaagttgcagcagtgtccagagataa 23689998  T
Q  105 aaggaaaagaattctgcaagtgaataagttagatgtggcatcaaaaaagactaatgattcatcctctacatccataacaccattacaatccaatgtaaca 204  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23689997 aagggaaagaattctgcaagtgaataagttagatgtggcatcaaaaaagactaatgattcatcctctacatccataacaccattacaatccaatgtaaca 23689898  T
Q  205 tactctcaaagagagaactcaacttcttcaagagataatagaagaagagttctttttgaaaagagagcttcaccatctctgtccatatctaatacttcta 304  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23689897 tactctcaaagagagaactcaacttctttaagagataatagaagaagagttctttttgaaaagagagcttcaccatctctgtccatatctaatactccta 23689798  T
Q  305 ctacatccaaaaaagccaaagtctacactacacctttaggcttaaagttaccagattaaaggaaccgctggctttcgcgcgcccgttaccagattttaag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  |||||||||||||||||||||||||||||||    
T  23689797 ctacatccaaaaaagccaaagtctacactacacctttaggcttaaagttaccaaattaaaggtaccgtcggctttcgcgcgcccgttaccagattttaag 23689698  T
Q  405 cttataactgccagctttcgcatgcaaagttacaattttaaagtctcttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtat 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  23689697 cttataactgccagctttcgcatgcaaagttacaattttaaagtctcttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcgctgtat 23689598  T
Q  505 ttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatattta 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23689597 ttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcgatatgaaaccggtgtcactttatttcagctttcgctgaaaatattta 23689498  T
Q  605 gctttaaaaatcagaattttcagacttaaacataattcatgttatagtttctcataaaagtgaaaatatcagtttctaaatcaatgaatttctctctaaa 704  Q
    |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23689497 gctttaaaaatcagaattttcagacttaaaaataattcatgttacaatttctcataaaagtgaaaatatcagtttctaaatcaatgaatttctctctaaa 23689398  T
Q  705 aagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagtagtggagaatat 799  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  23689397 aagcttggtgtcttcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttcatatcatgtcccaagtagtggagaatat 23689303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 467 - 590
Target Start/End: Complemental strand, 28387013 - 28386890
Alignment:
Q  467 aatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcgatatgaaac 566  Q
    ||||||||||| ||||||||||||||||||| | |  |||||||||||||| || ||  | |||||||||||||||||||||| ||||||||||||||||    
T  28387013 aatttctaaattaattaaagaaaacgctttcgctgagtttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcgatatgaaac 28386914  T
Q  567 tggtgtcactttatttcagctttc 590  Q
     ||| ||||| ||||||| |||||    
T  28386913 cggtatcactctatttcaactttc 28386890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 111; Significance: 1e-55; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 374 - 647
Target Start/End: Original strand, 76063 - 76337
Alignment:
Q  374 ggctttcgcgcgcccgttaccagattttaagcttataactgccagctttcgcatgcaaagttacaattttaaagtctc-ttttcgaaaattagtaatttc 472  Q
    |||||||||||||||| ||||  ||||||| || | ||  ||||||||||||||| | |   |||| |||||| |  | |||| ||||||||| ||||||    
T  76063 ggctttcgcgcgcccggtaccgtattttaaactcacaagcgccagctttcgcatgtacaaccacaagtttaaaatagcctttttgaaaattagaaatttc 76162  T
Q  473 taaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcgatatgaaactggtgt 572  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | |||| ||||||||||||||||| |||||||||||||||| ||| |    
T  76163 taaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattctacagtcagatacaggtttcactctttcgatatgaaaccggtat 76262  T
Q  573 cactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattcatgtt 647  Q
    |||||||||||||||||||| | ||||||| | | ||||||||||||||||||||||||||| | ||||| ||||    
T  76263 cactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgtt 76337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 451 - 648
Target Start/End: Original strand, 87866 - 88063
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||| ||||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | |||| |||||||||||||||||     
T  87866 ctttttgaatattagaaatttctaaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattctacagtcagatacaggtttcac 87965  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattcatgtta 648  Q
    |||||||||||||||| ||| ||||||||||||||||||||| | ||||||| | | ||||||| ||||||||||||||||||| | ||||| |||||    
T  87966 tctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaaccagaattttcagacttaaaaacaattcctgtta 88063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 718 - 796
Target Start/End: Original strand, 88646 - 88724
Alignment:
Q  718 tcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagtagtggagaa 796  Q
    |||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||  ||||||||||||||    
T  88646 tcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaa 88724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 691 - 754
Target Start/End: Original strand, 77069 - 77131
Alignment:
Q  691 aatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaat 754  Q
    ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  77069 aatttctctctgaaaagcttgg-gtcttcaactgagttcttcaggtctatttatagggaaaaat 77131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 5e-55; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 451 - 648
Target Start/End: Complemental strand, 15941995 - 15941798
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | ||||||||||| ||||||||||||||||||| |  |||||||||||||||| || ||  | ||||||||||||||||||||||     
T  15941995 ctttttgaaaatttgaaatttctaaattaattaaagaaaacgctttcgctatatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcac 15941896  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattcatgtta 648  Q
    |||||||||||||||| ||| ||||||||||||||||||||| | ||||||| | | ||||||||||||||||||||||||||| | |||||||||||    
T  15941895 tctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcatgtta 15941798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 451 - 648
Target Start/End: Complemental strand, 15933652 - 15933455
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | ||||||||||| ||||||||||||||||||| |  |||||||||||||||| || ||  | ||||| ||||||||||||||||     
T  15933652 ctttttgaaaatttgaaatttctaaattaattaaagaaaacgctttcgctatatttcaaaatcaattcctaaaaattctacgatcagatacaggtttcac 15933553  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattcatgtta 648  Q
    |||||||||||||||| ||| ||||||||||||||||||||| | ||||||| | | ||||||||||||||||||||||||||| | ||||| |||||    
T  15933552 tctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgtta 15933455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 451 - 648
Target Start/End: Complemental strand, 7159696 - 7159499
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  |  ||| |||| | ||||||||||     
T  7159696 ctttttgaaaattagaaatttctaaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattatactgtcatacacaggtttcac 7159597  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattcatgtta 648  Q
    |||||||||||||||| ||| ||||||||||||||||||||| | ||||||| | | ||||||||||||||||||||||||||| | ||||| |||||    
T  7159596 tctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcttgtta 7159499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 693 - 796
Target Start/End: Complemental strand, 15932807 - 15932704
Alignment:
Q  693 tttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagtagtgg 792  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||  ||||||||||    
T  15932807 tttctctctaaaaagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtgg 15932708  T
Q  793 agaa 796  Q
    ||||    
T  15932707 agaa 15932704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 693 - 796
Target Start/End: Complemental strand, 15941149 - 15941046
Alignment:
Q  693 tttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagtagtgg 792  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||  ||||||||||    
T  15941149 tttctctctaaaaagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtgg 15941050  T
Q  793 agaa 796  Q
    ||||    
T  15941049 agaa 15941046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 674 - 793
Target Start/End: Original strand, 47921834 - 47921953
Alignment:
Q  674 cagtttctaaatcaatgaatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctg 773  Q
    ||||||||||||   ||||||| |||||| |||||||||||||  ||| |||||| | ||||| |||||||||||  |||||| |  ||| |||||||||    
T  47921834 cagtttctaaattgctgaatttatctctataaagcttggtgtccacaagtgagttttccaggtttatttataggctgaaatctgccctgaagtgcttctg 47921933  T
Q  774 atcatgttccaagtagtgga 793  Q
    |||||||   ||||||||||    
T  47921934 atcatgtcttaagtagtgga 47921953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 691 - 796
Target Start/End: Complemental strand, 7157807 - 7157703
Alignment:
Q  691 aatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagtagt 790  Q
    ||||||||||| ||||||||||||||  |||||||||| | ||||| ||||||||||   |||||| |  ||| |||| |||||||||||  ||||||||    
T  7157807 aatttctctctgaaaagcttggtgtccacaactgagttttccaggtttatttataggttgaaatctgc-ctgaagtgcgtctgatcatgtctcaagtagt 7157709  T
Q  791 ggagaa 796  Q
    ||||||    
T  7157708 ggagaa 7157703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 5e-55; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 451 - 648
Target Start/End: Complemental strand, 11165091 - 11164894
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||||||| || ||  | |||| |||||||||| ||||||     
T  11165091 ctttttgaaaattagaaatttctaaattaattaaagaaaacgttttcactgtatttcaaaatcaattcctaaaaattctacagtcagatacatgtttcac 11164992  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattcatgtta 648  Q
    |||||||||||||||||||| ||||||||||||||||||||| | ||||||| | | ||||||||||||||||||||||||||| | ||||| |||||    
T  11164991 tctttcgatatgaaactggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgtta 11164894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 374 - 641
Target Start/End: Complemental strand, 16636677 - 16636416
Alignment:
Q  374 ggctttcgcgcgcccgttaccagattttaagcttataactgccagctttcgcatgcaaagttacaattttaaagtctcttttcgaaaattagtaatttct 473  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||||||||| ||| | |||| |||||||| |||||||| | ||||| |||||||||    
T  16636677 ggctttcgcacgtccgttaccagattttaagcttataactgtcagctttcgcacgcacaattactattttaaaatctctttttggaaatttgtaatttct 16636578  T
Q  474 aaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcgatatgaaactggtgtc 573  Q
    |||| ||||||||||||| ||||  | ||||||||||||||||| ||| |||| ||| |||      || |||||| | |||||||||||||| ||| ||    
T  16636577 aaattaattaaagaaaacccttttgccgtatttcaaaatcaattcctggattttctatggt------caagtttcactgtttcgatatgaaaccggtatc 16636484  T
Q  574 actttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataatt 641  Q
    |||||||| || |||||| || ||||||  | | |||||| |||||||||||| ||||||| ||||||    
T  16636483 actttattccatctttcgttgtaaatatccatcgttaaaactcagaattttcaaacttaaaaataatt 16636416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 672 - 796
Target Start/End: Complemental strand, 11164259 - 11164135
Alignment:
Q  672 atcagtttctaaatcaatgaatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttc 771  Q
    |||||||||||||| |   |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| || ||| |||||||    
T  11164259 atcagtttctaaataacacaatttctctctaaaaagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttc 11164160  T
Q  772 tgatcatgttccaagtagtggagaa 796  Q
    |||||||||||| ||||||||||||    
T  11164159 tgatcatgttcctagtagtggagaa 11164135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 451 - 648
Target Start/End: Complemental strand, 14234569 - 14234371
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | ||||||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | |||| |||||||||||||||||     
T  14234569 ctttttgaaaatttgaaatttctaaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattctaccgtcagatacaggtttcac 14234470  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagac-ttaaacataattcatgtta 648  Q
    |||||||||||||||| ||| ||||| ||||||| |||||  || |||| || |   || ||| |||||||||| |||| ||||| |||||||||||||    
T  14234469 tctttcgatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgtttaaagtcagaatttttagactttaaaaataattcatgtta 14234371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 451 - 590
Target Start/End: Complemental strand, 14224474 - 14224335
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | ||||||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | |||| |||||||||||||||||     
T  14224474 ctttttgaaaatttgaaatttctaaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattctaccgtcagatacaggtttcac 14224375  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttc 590  Q
    |||||||||||||||| ||| ||||| ||||||| |||||    
T  14224374 tctttcgatatgaaaccggtatcactgtatttcaactttc 14224335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 458 - 634
Target Start/End: Original strand, 27079603 - 27079783
Alignment:
Q  458 aaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcg 557  Q
    |||||||||||||||||||||||||||||||||| |||||   |||||||||||||||||||| ||||| |||||||   |||||||||| | |||||||    
T  27079603 aaaattagtaatttctaaatcaattaaagaaaacactttcgatgtatttcaaaatcaatttctaaattttctacggtaccatacaggttttactctttcg 27079702  T
Q  558 atat----gaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaa 634  Q
    ||||    ||||    | ||||||||||||||||||   || |||||||||   |||||||||||||||||||||||||||    
T  27079703 atatgaaagaaagaaatatcactttatttcagctttatttgtaaatatttattgttaaaaatcagaattttcagacttaaa 27079783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 693 - 796
Target Start/End: Complemental strand, 16635768 - 16635665
Alignment:
Q  693 tttctctctaaaaa-gcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagtagtg 791  Q
    |||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||| |||||||  || |||  |||||||||||||||||  |||||||    
T  16635768 tttctctctaaaaaagcttggtgtcttcaactgaattctttaggtctatttatagg-aaaaatcggctctgaaatgcttctgatcatgttctcagtagtg 16635670  T
Q  792 gagaa 796  Q
    |||||    
T  16635669 gagaa 16635665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 691 - 796
Target Start/End: Original strand, 50881660 - 50881767
Alignment:
Q  691 aatttctctctaaaaa-gcttggtgtcgtcaactgagttcttcaggtctatttataggc-aaaaatctcctttgaggtgcttctgatcatgttccaagta 788  Q
    |||||||||||||||| |||||||| | ||||||||||  || |||||||||||||||| |||||||| |||||| |||| |||||||||||  |||||     
T  50881660 aatttctctctaaaaatgcttggtgccttcaactgagtctttaaggtctatttataggcaaaaaatctgctttgaagtgcctctgatcatgtctcaagtg 50881759  T
Q  789 gtggagaa 796  Q
    ||||||||    
T  50881760 gtggagaa 50881767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 452 - 642
Target Start/End: Original strand, 50879229 - 50879419
Alignment:
Q  452 ttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaat 551  Q
    |||| ||||||||| ||||||||||| ||||||| | || | | || | | |||| ||||| ||||  |||||   |||||| |||||||| |||||| |    
T  50879229 tttttgaaaattagaaatttctaaattaattaaaaagaatgttgtcgctgaattttaaaattaattcttgaatcatctacggacagatacatgtttcact 50879328  T
Q  552 ctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattc 642  Q
    ||||||||||||||| ||| || | ||||| ||| |||| | | ||||||| | | || | ||||||||||||||  |||||| |||||||    
T  50879329 ctttcgatatgaaaccggtatcgcattattccagttttcaccgtaaatattcatcgttgataatcagaattttcaagcttaaaaataattc 50879419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 5e-55; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 451 - 648
Target Start/End: Original strand, 11176887 - 11177084
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||||  ||||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||  | |||| |||||||||||||||||     
T  11176887 ctttttgaaaattaaaaatttctaaattaattaaagaaaacgctttcactgtatttcaaaatcaattcctaaaaattctacagtcagatacaggtttcac 11176986  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattcatgtta 648  Q
    |||||||||||||||| ||| ||||||||||||||||||||| | ||||||| | | ||||||||||||||||||||||||||| | ||||| |||||    
T  11176987 tctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaatattcatcgttaaaaatcagaattttcagacttaaaaacaattcctgtta 11177084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 374 - 642
Target Start/End: Complemental strand, 23047606 - 23047354
Alignment:
Q  374 ggctttcgcgcgcccgttaccagattttaagcttataactgccagctttcgcatgcaaagttacaattttaaagtctcttttcgaaaattagtaatttct 473  Q
    ||||||||| || |||||||||||||||||||||||||  | |||||| |||||||| ||||||||| ||||| ||||| || |||||||  ||||||||    
T  23047606 ggctttcgcacgtccgttaccagattttaagcttataaaagtcagcttccgcatgcacagttacaatcttaaaatctctctttgaaaatttataatttct 23047507  T
Q  474 aaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcgatatgaaactggtgtc 573  Q
    |||| ||||||||    ||            |||||||||||||||||||||| ||||  |||||||||||||||| ||| || ||||||||| ||| ||    
T  23047506 aaattaattaaag----cg------------ttcaaaatcaatttctgaattttctacaatcagatacaggtttcactctctcaatatgaaaccggtatc 23047423  T
Q  574 actttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattc 642  Q
     | |||||||| ||||||||| ||||||||   |||||||||||||||||||||| ||||| |||||||    
T  23047422 gcattatttcaactttcgctgtaaatatttgtatttaaaaatcagaattttcagatttaaaaataattc 23047354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 451 - 648
Target Start/End: Original strand, 11296201 - 11296398
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||  | ||| || |||| ||| ||||||     
T  11296201 ctttttgaaaattagaaatttctaaattaattaaagaaaacgctttcactgtatttcaaaatcaattcctaaaaattctatggacagagacaagtttcac 11296300  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattcatgtta 648  Q
    |||||| || |||||| ||| || | ||||||||| ||||  || | ||||| | | |||||||||| |||||||||||||||| |||||||||||||    
T  11296301 tctttcaatgtgaaaccggtatcgcgttatttcagttttcattgtacatattcatcgttaaaaatcaaaattttcagacttaaaaataattcatgtta 11296398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 672 - 796
Target Start/End: Original strand, 11177684 - 11177808
Alignment:
Q  672 atcagtttctaaatcaatgaatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttc 771  Q
    |||||||||||||||| | ||||||| |  | ||||||||||||| |||||||||||||||||||||||||||||| |||||||| || ||| |||||||    
T  11177684 atcagtttctaaatcactaaatttctttgcataaagcttggtgtcttcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttc 11177783  T
Q  772 tgatcatgttccaagtagtggagaa 796  Q
    |||||||||  ||||||||||||||    
T  11177784 tgatcatgtctcaagtagtggagaa 11177808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 676 - 782
Target Start/End: Complemental strand, 23046717 - 23046611
Alignment:
Q  676 gtttctaaatcaatgaatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgat 775  Q
    |||||||||| | ||||| ||||||||| | |||||||||| ||||||||||||||||||| |||||||||| |||||||| || | | ||| | |||||    
T  23046717 gtttctaaataactgaatctctctctaatatgcttggtgtcttcaactgagttcttcaggtttatttatagggaaaaatctgctctcaagtgttcctgat 23046618  T
Q  776 catgttc 782  Q
    |||||||    
T  23046617 catgttc 23046611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 457 - 517
Target Start/End: Complemental strand, 3779788 - 3779728
Alignment:
Q  457 gaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatt 517  Q
    ||||||||||||||||||||| |||||||||||| ||| | || |||||| ||||||||||    
T  3779788 gaaaattagtaatttctaaattaattaaagaaaatgctctgactgtattttaaaatcaatt 3779728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 8e-54; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 451 - 634
Target Start/End: Complemental strand, 34658059 - 34657876
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||||   ||||||||||| |||||||||||| | ||||||||||||||||||||||     
T  34658059 ctttttgaaaattagaaatttctaaattaattaaagaaaacgctttcgttgtatttcaaaaccaatttctgaatcttctacggtcagatacaggtttcac 34657960  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaa 634  Q
    |||||||||||||||  ||| ||||||||||||| ||||||||| ||||||| | | ||||||||||||||||||| |||||||    
T  34657959 tctttcgatatgaaatcggtatcactttatttcaactttcgctgtaaatattaatcgttaaaaatcagaattttcaaacttaaa 34657876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 450 - 656
Target Start/End: Complemental strand, 19184309 - 19184103
Alignment:
Q  450 tcttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttca 549  Q
    |||||| ||||||||| ||||||||||| |||||||||||| ||||| || ||||||||||||||||| || ||  | | | | |||||||||| |||||    
T  19184309 tctttttgaaaattagaaatttctaaattaattaaagaaaatgctttaactgtatttcaaaatcaattcctaaaaattccatgatcagatacagatttca 19184210  T
Q  550 atctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattcatgttat 649  Q
     |||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |   ||||||||||||||||||||||||||| | ||||  |||||     
T  19184209 ctctttcgatatgaaaccggtgtcactttatttcaactttcgctgtaaatattaattgttaaaaatcagaattttcagacttaaaaacaatttctgttac 19184110  T
Q  650 agtttct 656  Q
    |||||||    
T  19184109 agtttct 19184103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 451 - 633
Target Start/End: Complemental strand, 31233224 - 31233042
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||  ||||||||| || ||| ||| ||||||| ||||||     
T  31233224 ctttttgaaaattagtaatttctaaatcaattaaagaaaacactttcgctgtatttcaaaattcatttctgaaatttctaaggttagatacaagtttcac 31233125  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaa 633  Q
    |||||||| |||||||   | ||||||||||||||||||||| | ||||||||| | |||||||||||||||| |||||||||    
T  31233124 tctttcgacatgaaacctatatcactttatttcagctttcgccgtaaatatttatccttaaaaatcagaatttccagacttaa 31233042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 451 - 656
Target Start/End: Original strand, 20933377 - 20933583
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | ||||||||||| |||||||||||| |||||| | ||||||||||||||||| || ||  | ||||||||||||||||||||||     
T  20933377 ctttttgaaaatttgaaatttctaaattaattaaagaaaatgctttcgctgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcac 20933476  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagac-ttaaacataattcatgttat 649  Q
    |||||||||||||||| ||| ||| | ||||||| ||||   || |||| || |   || |||||||||||||| |||| ||||| ||||||| ||||||    
T  20933477 tctttcgatatgaaaccggtatcattgtatttcaactttaattgtaaatgttaattgtttaaaatcagaatttttagactttaaaaataattcctgttat 20933576  T
Q  650 agtttct 656  Q
    | |||||    
T  20933577 aatttct 20933583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 451 - 584
Target Start/End: Complemental strand, 20928894 - 20928761
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | ||||||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | ||||||||||||||||||||||     
T  20928894 ctttttgaaaatttgaaatttctaaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcac 20928795  T
Q  551 tctttcgatatgaaactggtgtcactttatttca 584  Q
    ||||| |||||||||| ||| ||||| |||||||    
T  20928794 tctttagatatgaaaccggtatcactgtatttca 20928761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 689 - 796
Target Start/End: Original strand, 20934265 - 20934372
Alignment:
Q  689 tgaatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagta 788  Q
    ||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||  |||||||| || ||| |||||||||||||| |  ||||||    
T  20934265 tgaatttctctctaaaatgcttggtgtattcaactgagttcttcaggtctatttatagagaaaaatctgctctgaagtgcttctgatcatatctcaagta 20934364  T
Q  789 gtggagaa 796  Q
    ||||||||    
T  20934365 gtggagaa 20934372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 674 - 796
Target Start/End: Complemental strand, 34657245 - 34657124
Alignment:
Q  674 cagtttctaaatcaatgaatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctg 773  Q
    |||||||||||| |   ||||||||||||||||||||||||||  |||||||||| | ||||| |||||||||||  |||||| |  ||| |||||||||    
T  34657245 cagtttctaaataacacaatttctctctaaaaagcttggtgtccacaactgagttttccaggtttatttataggctgaaatctgc-ctgaagtgcttctg 34657147  T
Q  774 atcatgttccaagtagtggagaa 796  Q
    |||||||  ||||||||||||||    
T  34657146 atcatgtctcaagtagtggagaa 34657124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 701 - 792
Target Start/End: Complemental strand, 19183930 - 19183839
Alignment:
Q  701 taaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagtagtgg 792  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| || |||||||| || ||| ||||||||| |||| |||  ||||||||    
T  19183930 taaaaagcttggtgtcttcaactgagttcttcaggtttatttatggggaaaaatctgctctgaagtgcttctggtcattttctcagtagtgg 19183839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 753
Target Start/End: Complemental strand, 31232393 - 31232313
Alignment:
Q  672 atcagtttctaaatcaatgaatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaa 753  Q
    ||||| |||||| ||| | ||| ||||| |||||||||||||| | ||||||||||| || | || ||||||||||||||||    
T  31232393 atcagattctaagtcactaaatatctctttaaaaagcttggtgccttcaactgagtt-tttaagtttatttataggcaaaaa 31232313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 106; Significance: 1e-52; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 360 - 648
Target Start/End: Original strand, 38194 - 38483
Alignment:
Q  360 ttaaaggaaccgctggctttcgcgcgcccgttaccagattttaagcttataactgccagctttcgcatgcaaagttacaattttaaagtctc-ttttcga 458  Q
    ||||||| ||||  |||||||||||||||| ||||  ||||||| || | ||  ||||||||||||||| |   | |||| |||||| |  | |||| ||    
T  38194 ttaaaggtaccgtcggctttcgcgcgcccggtaccgtattttaaactcacaagcgccagctttcgcatgtacgatcacaagtttaaaatagcctttttga 38293  T
Q  459 aaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcga 558  Q
    ||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | ||||| |||||||||||||||| ||||||||    
T  38294 aaattagaaatttctaaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattctacgttcagatacaggtttcactctttcga 38393  T
Q  559 tatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattcatgtta 648  Q
    |||||||| ||| ||||||||||||| ||||| | | ||||||| | | ||||||||||||||||||||||||||| | ||||| |||||    
T  38394 tatgaaaccggtatcactttatttcaactttcaccgtaaatattaatcgttaaaaatcagaattttcagacttaaaaacaattcctgtta 38483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 674 - 796
Target Start/End: Original strand, 39116 - 39238
Alignment:
Q  674 cagtttctaaatcaatgaatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctg 773  Q
    ||||||||||||   ||||||| |||||| |||||||||| |   |||||||||| | || || |||||||||||  |||||| |  ||| |||||||||    
T  39116 cagtttctaaattgctgaatttatctctataaagcttggtattcacaactgagttttccaagtttatttataggctgaaatctgccctgaagtgcttctg 39215  T
Q  774 atcatgttccaagtagtggagaa 796  Q
    |||||||  ||||||||||||||    
T  39216 atcatgtctcaagtagtggagaa 39238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 375 - 634
Target Start/End: Complemental strand, 7960577 - 7960317
Alignment:
Q  375 gctttcgcgcgcccgttaccagattttaagcttataactgccagctttcgcatgcaaagttacaattttaaagtctctt-ttcgaaaattagtaatttct 473  Q
    ||||||||||||||||||||  ||||||| || |||   |||||||||||| || |    ||||| |||||| |  ||| || ||||||||| |||||||    
T  7960577 gctttcgcgcgcccgttaccgtattttaaactcatagacgccagctttcgcgtgtacgcctacaagtttaaaatagcttgtttgaaaattagcaatttct 7960478  T
Q  474 aaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcgatatgaaactggtgtc 573  Q
    |||| ||||||||||||||||||| |  |||||||||| |||||||| ||||| |||  || |||||||||||||| |||||||||||||||| ||| ||    
T  7960477 aaattaattaaagaaaacgctttcgctatatttcaaaaccaatttctaaattttctatagttagatacaggtttcactctttcgatatgaaaccggtatc 7960378  T
Q  574 actttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaa 634  Q
     |||||||||| ||||||||| ||||||| | | |||||||||||||||||||||||||||    
T  7960377 gctttatttcaactttcgctgtaaatattaatcgttaaaaatcagaattttcagacttaaa 7960317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 88; Significance: 7e-42; HSPs: 2)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 451 - 634
Target Start/End: Complemental strand, 17174 - 16991
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | |||| |||||||| ||||||||     
T  17174 ctttttgaaaattagaaatttctaaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattctacagtcagatataggtttcac 17075  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaa 634  Q
    |||||||||||||||  | | |||||||||| |||||||||| | ||||||| | |||| |||||||||||||||| |||||||    
T  17074 tctttcgatatgaaatcgatatcactttattccagctttcgccgtaaatattcatcttttaaaatcagaattttcaaacttaaa 16991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 672 - 796
Target Start/End: Complemental strand, 16283 - 16159
Alignment:
Q  672 atcagtttctaaatcaatgaatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttc 771  Q
    |||||||||||||||| | ||||||| | || ||||||||||||| |||||||||||||||||||||||||||||  |||||||| |||||| |||||||    
T  16283 atcagtttctaaatcactaaatttctttgtataaagcttggtgtcatcaactgagttcttcaggtctatttatagagaaaaatctgctttgaagtgcttc 16184  T
Q  772 tgatcatgttccaagtagtggagaa 796  Q
    |||||||||||| ||||||||||||    
T  16183 tgatcatgttcctagtagtggagaa 16159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 451 - 648
Target Start/End: Complemental strand, 12532 - 12335
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||| | |||||| |||||||||| || ||  |  |||  ||| |||||| |||||     
T  12532 ctttttgaaaattagaaatttctaaattaattaaagaaaacgctttcgctgtattttaaaatcaattcctaaaaattttactttcatatacagttttcac 12433  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattcatgtta 648  Q
    |||||||||||||||| ||| ||||||||||||||||||||| | ||||||| |   ||||||||||||||||||||||||||| | ||||| |||||    
T  12432 tctttcgatatgaaaccggtatcactttatttcagctttcgccgtaaatattcattgttaaaaatcagaattttcagacttaaatacaattcctgtta 12335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 691 - 796
Target Start/End: Complemental strand, 9739 - 9634
Alignment:
Q  691 aatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagtagt 790  Q
    ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||    
T  9739 aatttctctctgaaaagcttggtgtcatcaactgagttcttcaagtctatttatagggaaaaatctgctttgaagtgcttctgatcatgttcctagtagt 9640  T
Q  791 ggagaa 796  Q
    ||||||    
T  9639 ggagaa 9634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 4e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 451 - 648
Target Start/End: Original strand, 18487095 - 18487293
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | ||| ||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | ||||||||||||||||||||||     
T  18487095 ctttttgaaaatttgaaatctctaaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcac 18487194  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagac-ttaaacataattcatgtta 648  Q
    |||||||||||||||| ||| ||||| ||||||| |||||  || |||| || |   || |||||||||||||| |||| ||||| ||||||| |||||    
T  18487195 tctttcgatatgaaaccggtatcactgtatttcaactttcattgtaaatgttaattgtttaaaatcagaatttttagactttaaaaataattcctgtta 18487293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 458 - 648
Target Start/End: Original strand, 18477006 - 18477197
Alignment:
Q  458 aaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcg 557  Q
    |||||| | ||| ||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | |||||||||||||||||||||| |||||||    
T  18477006 aaaatttgaaatctctaaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcg 18477105  T
Q  558 atatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagac-ttaaacataattcatgtta 648  Q
    ||||||||| | | ||||| ||||||| |||||  || |||| || |   || |||||||||||||| |||| ||||| ||||||| |||||    
T  18477106 atatgaaaccgatatcactgtatttcaactttcattgtaaatgttaattgtttaaaatcagaatttttagactttaaaaataattcctgtta 18477197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 744
Target Start/End: Original strand, 7589080 - 7589131
Alignment:
Q  693 tttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttat 744  Q
    |||||||||| ||||||||||| | |||| ||||||||||| ||||||||||    
T  7589080 tttctctctagaaagcttggtgccttcaaatgagttcttcatgtctatttat 7589131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 642
Target Start/End: Original strand, 7588483 - 7588581
Alignment:
Q  544 gtttcaatctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaacataattc 642  Q
    |||||| ||||||||||||||||  || || | ||||| ||||||||||   ||||||| | | ||||||||||||| | |||| |||||| |||||||    
T  7588483 gtttcactctttcgatatgaaaccagtatcgcgttattccagctttcgccctaaatattcatcgttaaaaatcagaagtatcaggcttaaaaataattc 7588581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 718 - 796
Target Start/End: Original strand, 17951075 - 17951153
Alignment:
Q  718 tcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagtagtggagaa 796  Q
    ||||||||||| |  |||| ||||||||||  |||||   || ||| |||||||||||||||| |||||||||||||||    
T  17951075 tcaactgagttttcaaggtttatttataggataaaattggctctgaagtgcttctgatcatgtcccaagtagtggagaa 17951153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 482
Target Start/End: Complemental strand, 9981285 - 9981176
Alignment:
Q  373 tggctttcgcgcgcccgttaccagattttaagcttataactgccagctttcgcatgcaaagttacaattttaaagtctcttttcgaaaattagtaatttc 472  Q
    ||||||| |||||  ||||||| |||||||| || |||||| ||||||||||||| |    ||| ||||||||| |||||||| | ||||| ||| ||||    
T  9981285 tggcttttgcgcgttcgttaccggattttaaactaataactaccagctttcgcatacccgattataattttaaaatctctttttggaaatttgtattttc 9981186  T
Q  473 taaatcaatt 482  Q
     |||| ||||    
T  9981185 gaaattaatt 9981176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 451 - 584
Target Start/End: Complemental strand, 117014 - 116881
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | ||||||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | ||||||||||||||||||||||     
T  117014 ctttttgaaaatttgaaatttctaaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcac 116915  T
Q  551 tctttcgatatgaaactggtgtcactttatttca 584  Q
    |||||||||||||||| ||| ||||| |||||||    
T  116914 tctttcgatatgaaaccggtatcactgtatttca 116881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 451 - 590
Target Start/End: Complemental strand, 33192 - 33053
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | ||||||||||| ||||||||||||||||||| | | ||||||||||||||| || ||  | ||||||||||||||||||||||     
T  33192 ctttttgaaaatttgaaatttctaaattaattaaagaaaacgctttcgctgaatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcac 33093  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttc 590  Q
    |||||||||||||||| ||| ||||| ||||||| |||||    
T  33092 tctttcgatatgaaaccggtatcactgtatttcaactttc 33053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 722 - 776
Target Start/End: Complemental strand, 32484 - 32430
Alignment:
Q  722 ctgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatc 776  Q
    |||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||    
T  32484 ctgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatc 32430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 458 - 648
Target Start/End: Complemental strand, 187110 - 186919
Alignment:
Q  458 aaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcg 557  Q
    |||||| | ||||||||||| |||||||||||||||||||    |||||||||||||||| || ||  | |||||||||||||||||||||| |||||||    
T  187110 aaaatttgaaatttctaaattaattaaagaaaacgctttcgttatatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcg 187011  T
Q  558 atatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcaga-cttaaacataattcatgtta 648  Q
    ||||||||| ||| ||||||||||||| |||||  || ||||||| |   || |||||||||||||| |||  ||||| ||||||| |||||    
T  187010 atatgaaaccggtatcactttatttcaactttcattgtaaatattaattgtttaaaatcagaatttttagagtttaaaaataattcctgtta 186919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 689 - 796
Target Start/End: Original strand, 19901794 - 19901901
Alignment:
Q  689 tgaatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagta 788  Q
    ||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||| |||||||| || ||| ||||||| ||||||||  ||||||    
T  19901794 tgaatttctctctaaaatgcttggtgtattcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttccgatcatgtctcaagta 19901893  T
Q  789 gtggagaa 796  Q
    ||||||||    
T  19901894 gtggagaa 19901901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 451 - 589
Target Start/End: Original strand, 19900908 - 19901046
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | ||||||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | || |||||||||||||||||||     
T  19900908 ctttttgaaaatttgaaatttctaaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattctccggtcagatacaggtttcac 19901007  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagcttt 589  Q
    ||||| |||||||||| ||| ||||| ||||||| ||||    
T  19901008 tcttttgatatgaaaccggtatcactgtatttcaacttt 19901046  T

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Target: scaffold1407 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold1407
Description:

Target: scaffold1407; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 451 - 634
Target Start/End: Original strand, 640 - 823
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | ||||||||||| |||||||||||| |||||| | ||| ||||||||||||| || ||  | ||||||||||||||| ||||||     
T  640 ctttttgaaaatttgaaatttctaaattaattaaagaaaaagctttcgctgtaattcaaaatcaattcctaaaaattctacggtcagatacatgtttcac 739  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagacttaaa 634  Q
    |||||||||||||||| | | ||||| ||||||| |||||  || |||| || |   || |||||||||||||| |||||||||    
T  740 tctttcgatatgaaaccgatatcactgtatttcaactttcattgtaaatgttaattgtttaaaatcagaatttttagacttaaa 823  T

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Target: scaffold1407; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 693 - 776
Target Start/End: Original strand, 1332 - 1415
Alignment:
Q  693 tttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatc 776  Q
    |||||||||||||||||||      |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||    
T  1332 tttctctctaaaaagcttgcccctttcaactgagttcttcaggtctatttatagggaaaaatctcctctgaagtgcttctgatc 1415  T

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Target: scaffold0226 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 458 - 648
Target Start/End: Complemental strand, 4555 - 4364
Alignment:
Q  458 aaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcg 557  Q
    |||||| | ||| ||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | |||||||||||||||||||||| |||||||    
T  4555 aaaatttgaaatctctaaattaattaaagaaaacgctttctctgtatttcaaaatcaattcctaaaaattctacggtcagatacaggtttcactctttcg 4456  T
Q  558 atatgaaactggtgtcactttatttcagctttcgctgaaaatatttagctttaaaaatcagaattttcaga-cttaaacataattcatgtta 648  Q
    |||||||||   | ||||| ||||||| |||||  || |||| || |   || |||||||||||||| ||| |||||| ||||||| |||||    
T  4455 atatgaaacctttatcactgtatttcaactttcattgtaaatgttaattgtttaaaatcagaatttttagaccttaaaaataattcctgtta 4364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 689 - 796
Target Start/End: Complemental strand, 3672 - 3565
Alignment:
Q  689 tgaatttctctctaaaaagcttggtgtcgtcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagta 788  Q
    ||||||||||||||||| ||||||| |   |||||||||| | ||||| |||||||||||  |||||| |  ||| ||||||||||||||||  ||||||    
T  3672 tgaatttctctctaaaatgcttggtattcacaactgagttttccaggtttatttataggctgaaatctgccctgaagtgcttctgatcatgtctcaagta 3573  T
Q  789 gtggagaa 796  Q
    ||||||||    
T  3572 gtggagaa 3565  T

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Target: scaffold0035 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 451 - 590
Target Start/End: Original strand, 87144 - 87283
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | || |||||||| |||||||||||| |||||| | ||||||||||||||||| || ||  | |||||||||||||||||| |||     
T  87144 ctttttgaaaatttgaaaattctaaattaattaaagaaaatgctttcgctgtatttcaaaatcaattcctaaacattctacggtcagatacaggtatcac 87243  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttc 590  Q
    |||||||||||||||| ||| ||||| ||||||| |||||    
T  87244 tctttcgatatgaaaccggtatcactgtatttcaactttc 87283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 451 - 590
Target Start/End: Original strand, 96838 - 96977
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaa 550  Q
    ||||| ||||||| | || |||||||| |||||||||||| |||||| | ||||||||||||||||| || ||  | |||||||||||||||||| |||     
T  96838 ctttttgaaaatttgaaacttctaaattaattaaagaaaatgctttcgctgtatttcaaaatcaattcctaaacattctacggtcagatacaggtatcac 96937  T
Q  551 tctttcgatatgaaactggtgtcactttatttcagctttc 590  Q
    |||||||||||||||| ||| ||||| ||||||| |||||    
T  96938 tctttcgatatgaaaccggtatcactgtatttcaactttc 96977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1661 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold1661
Description:

Target: scaffold1661; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 718 - 796
Target Start/End: Original strand, 156 - 234
Alignment:
Q  718 tcaactgagttcttcaggtctatttataggcaaaaatctcctttgaggtgcttctgatcatgttccaagtagtggagaa 796  Q
    |||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||  ||||||||||||||    
T  156 tcaactgagttcttcaggtctatttatagggaaaaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaa 234  T

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Target: scaffold0158 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 479 - 648
Target Start/End: Original strand, 35789 - 35959
Alignment:
Q  479 aattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcagatacaggtttcaatctttcgatatgaaactggtgtcacttt 578  Q
    |||||||||||||||| || | ||||||||||| ||||| || ||  | |||| |||||||||| |||||  |||||||||||||||| ||| |||||||    
T  35789 aattaaagaaaacgctctcgctgtatttcaaaaccaattcctaaaaattctacagtcagatacaagtttcgctctttcgatatgaaaccggtatcacttt 35888  T
Q  579 atttcagctttcgctgaaaatatttagctttaaaaatcagaattttcagac-ttaaacataattcatgtta 648  Q
    |||||| ||||   || ||||||| |   || |||||||||||||| |||| ||||| ||||||| |||||    
T  35889 atttcaactttgattgtaaatattaattgtttaaaatcagaatttttagactttaaaaataattcctgtta 35959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 451 - 538
Target Start/End: Complemental strand, 6018 - 5931
Alignment:
Q  451 cttttcgaaaattagtaatttctaaatcaattaaagaaaacgctttcacagtatttcaaaatcaatttctgaatttcctacggtcaga 538  Q
    ||||| ||||||| | ||||||||||| ||||||||||||||||||| | ||||||||||||||||| || ||  | |||||||||||    
T  6018 ctttttgaaaatttgaaatttctaaattaattaaagaaaacgctttcgctgtatttcaaaatcaattcctaaaaattctacggtcaga 5931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 360 - 477
Target Start/End: Complemental strand, 8532 - 8415
Alignment:
Q  360 ttaaaggaaccgctggctttcgcgcgcccgttaccagattttaagcttataactgccagctttcgcatgcaaagttacaattttaaagtctcttttcgaa 459  Q
    ||||||| || | |||||||| |||||  |||||| |||||||| |||||||| |||||||||||| ||||  ||||  |||||||| |||||||| | |    
T  8532 ttaaaggtacagttggctttcacgcgctagttaccggattttaaacttataaccgccagctttcgcgtgcacggttattattttaaaatctctttttgca 8433  T
Q  460 aattagtaatttctaaat 477  Q
    || | ||| |||||||||    
T  8432 aaattgtattttctaaat 8415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 119461 - 119399
Alignment:
Q  216 agagaactcaacttcttcaagagataatagaagaagagttctttttgaaaagagagcttcacc 278  Q
    |||||||||||||||||||||  | ||||||||||||||| | | ||||||||||| ||||||    
T  119461 agagaactcaacttcttcaaggcagaatagaagaagagttatatctgaaaagagagtttcacc 119399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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