View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_90 (Length: 435)
Name: NF1345_low_90
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_90 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 135 - 357
Target Start/End: Original strand, 42542182 - 42542405
Alignment:
| Q |
135 |
ttaacatcattttagttaagccattaccatccactacaaccctaaatgcatccagcactcacaaaccaaccagaaaagaacctcagatttctcgctaaga |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42542182 |
ttaacatcattttagttaagccattaccatccactacaaccctaaatgcatccagcactcacaaaccaaccagaaaagaacctcagatttctcgctaaga |
42542281 |
T |
|
| Q |
235 |
tgaccatattacaacccacaattacattttactcccagcacctaagcggtttctgttgaaaccttgaaatttacttat-aatgtttacaataaacagata |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42542282 |
tgaccatattacaacccacaattacattttactcccagcacctaagcggtttctgttgaaaccttgaaatttacttataaatgtttacaataaacagata |
42542381 |
T |
|
| Q |
334 |
ttagatgcttctgttcacaggttc |
357 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
42542382 |
ttagatgcttctgttcactggttc |
42542405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 49244558 - 49244674
Alignment:
| Q |
29 |
actattaaaaccgaagaggttctaaatgttgaacgtgaaagaaggaacaaattgaagcaaatgttcactcacctcactaccactgtccctactctccacc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49244558 |
actattaaaaccgaagaggttctaaatgttgaacgtgaaagaaggaacaaattgaagcaaatgttcactcacctcactaccactgtccctactctccacc |
49244657 |
T |
|
| Q |
129 |
ccaatgttaacatcatt |
145 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
49244658 |
ccaatgttaacatcatt |
49244674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University