View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1345_low_91 (Length: 433)
Name: NF1345_low_91
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_91 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 30 - 388
Target Start/End: Original strand, 52205502 - 52205858
Alignment:
| Q |
30 |
ctatgaacgtagaaatcgtaacgaagaatcatggttgtattgctctgttgcaggagtaatttctttgttatcttgcaagggtaactataaagttcacatt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
52205502 |
ctatgaacgtagaaatcgtaacgaagaatcatggttgtattgctctgttgcagaattaatttctctgttatcttgcaagggtaactataaagttcacatt |
52205601 |
T |
|
| Q |
130 |
tacaggacccnnnnnnnnttgttttgatctgcttgaagaatatattttacaactcacttgattgatactataattctcttttatgtaatattttaacgtg |
229 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52205602 |
tacaggacccaaaaaaaattgttttgatctgcttgaagaatatattttacaactcacttgattgatactataattctcttttatgtaatattttaacgtg |
52205701 |
T |
|
| Q |
230 |
ggtctttattcattcgacattttttcaaaatatgtctcattaaacagttctaggaaagtaaatttgttgcattcgtagaacaattctcccgtttgtatca |
329 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52205702 |
ggtccttattcattcgacattttttcaaaatatgtctcattaaacagttctaggaaagtaaatttgttgcattcgtagaacaattctcccgtttgtatca |
52205801 |
T |
|
| Q |
330 |
taacaattctaatgtaaacaacaagtacatgtatttgattttctcttttgtgcttttgg |
388 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
52205802 |
taac--ttctaatgtaaacaacaagtacatatatttgattttctctgttgtgcttttgg |
52205858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 30 - 384
Target Start/End: Original strand, 34309576 - 34309929
Alignment:
| Q |
30 |
ctatgaacgtagaaatcgtaacgaagaatcatggttgtattgctctgttgcaggagtaatttctttgttatctt--gcaagggtaactataaagttcaca |
127 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||| ||||| ||||| ||| |
|
|
| T |
34309576 |
ctatgaacgtagaaattgtaacgaaaaatcatggttgtattgctttgttacaggagtaatttctctgttatcttctgcaagggttactatgaagtttaca |
34309675 |
T |
|
| Q |
128 |
tttacaggacccnnnnnnnnttgttttgatctgcttgaagaatatattttacaactcacttgattgatactataattctcttttatgtaatattttaac- |
226 |
Q |
| |
|
||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34309676 |
cttatagaaccgaaaaaaatttgttttgatctgcttgaagaatatattgtacaactcacttgattgatactataattctcttttatgtaatattttaacg |
34309775 |
T |
|
| Q |
227 |
-gtgggtctttattcattcgacattttttcaaaatatgtctcattaaacagttctaggaaagtaaatttgttgcattcgtagaacaattctcccgtttgt |
325 |
Q |
| |
|
||||| | |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
34309776 |
tgtgggcccttattctttcgacatttttgcaaaatatgtctcattgaacagttctaggaaagtaaatctgtggcattcgtagaccaattctcccgtttgt |
34309875 |
T |
|
| Q |
326 |
atcataacaattctaatgtaaacaacaagtacatgtatttgattttctcttttgtgctt |
384 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||||||||||||| |||||||| |
|
|
| T |
34309876 |
atcataac--ttctaatgta---agcaagtacatgtatttgattttctctgttgtgctt |
34309929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 313 - 388
Target Start/End: Complemental strand, 3191259 - 3191186
Alignment:
| Q |
313 |
ttctcccgtttgtatcataacaattctaatgtaaacaacaagtacatgtatttgattttctcttttgtgcttttgg |
388 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3191259 |
ttctccagtttgtatcataac--ttctaatgtaaataacaagtacatgtatttgattttctctgttgtgcttttgg |
3191186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 3191372 - 3191270
Alignment:
| Q |
75 |
tgttgcaggagtaatttctttgttatctt--gcaagggtaactataaagttcacatttacaggacccnnnnnnnnttgttttgatctgcttgaagaatat |
172 |
Q |
| |
|
|||||||||||||||||| |||||| || |||| ||| ||||||||||||||||||| |||| || |||||||||||||||||||||||| |
|
|
| T |
3191372 |
tgttgcaggagtaatttcagtgttattttctgcaaaggttactataaagttcacatttatagga-ccgaaaaaaaatgttttgatctgcttgaagaatat |
3191274 |
T |
|
| Q |
173 |
attt |
176 |
Q |
| |
|
|||| |
|
|
| T |
3191273 |
attt |
3191270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University