View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1345_low_95 (Length: 433)
Name: NF1345_low_95
Description: NF1345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1345_low_95 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 41697873 - 41698043
Alignment:
| Q |
30 |
tgaactccattaacgaggggttgaaatattgtagaacatgattccaaagaacaatttttggcatggacacaaatcaacaacaagtaaattaaactaaggt |
129 |
Q |
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| T |
41697873 |
tgaactccattaacgaggggttgaaatattgtagaacatgattccaaagaacaatttttggcatggacacaaatcaacaacaagtaaattaaactaaggt |
41697972 |
T |
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| Q |
130 |
gttgcacctgttaaatcaacttatgtggag-gnnnnnnntacatgcatcaaaacaaagaatgtgttcagtt |
199 |
Q |
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| T |
41697973 |
gttgcacctgttaaatcaacttatgtggagaaaaaaaaatacatgcatcaaaacaaagaatgtgttcagtt |
41698043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 172 - 349
Target Start/End: Original strand, 41695542 - 41695719
Alignment:
| Q |
172 |
tgcatcaaaacaaagaatgtgttcagttaaacaatttcactgttaataagataacaaaataacatttcacatatataatgtacattttcatgctttaatt |
271 |
Q |
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| T |
41695542 |
tgcatcaaaacaaagaatgtgctcgtttaaacaatttcactattaataagataacacaataacatttcacatatataatatacattttcatgttataatt |
41695641 |
T |
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| Q |
272 |
taatttatagaaaatgagtggcctctaatgtatatgtcacaccaagccttccaatcaaatatgcattcaactttttgt |
349 |
Q |
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| T |
41695642 |
taatttatagaaaatgagtgacatctaatatatctgtcacgctaagccttccaatcaaatatgtattctgctttttgt |
41695719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 257 - 349
Target Start/End: Original strand, 41698042 - 41698134
Alignment:
| Q |
257 |
tttcatgctttaatttaatttatagaaaatgagtggcctctaatgtatatgtcacaccaagccttccaatcaaatatgcattcaactttttgt |
349 |
Q |
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| T |
41698042 |
tttcatgctttaatttaatttatagtaaatgagtggcctctaatgtatatgtcacatcaagccttccaatcaaatatgcattcaactttttgt |
41698134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 41695391 - 41695517
Alignment:
| Q |
34 |
ctccattaacgaggggttgaaatattgtagaacatgattccaaagaacaatttttggcatggacacaaatcaacaacaagtaaattaaactaaggtgttg |
133 |
Q |
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| T |
41695391 |
ctccattaaagaatggttgaaatactttagagcatgattctaacaaacattttttggcatggacacaaatcagtaacaagcaaactaaattaaggtgtta |
41695490 |
T |
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| Q |
134 |
cacctgttaaatcaacttatgtggagg |
160 |
Q |
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| T |
41695491 |
catgtatcaaatcaacttatttggagg |
41695517 |
T |
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