View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13460_high_10 (Length: 263)
Name: NF13460_high_10
Description: NF13460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13460_high_10 |
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| [»] scaffold1118 (1 HSPs) |
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| [»] scaffold0571 (1 HSPs) |
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Alignment Details
Target: scaffold1118 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 1580 - 1337
Alignment:
| Q |
19 |
tatgtaaattagtttaacactgacattgaactaattaaattgctatatctgccagttttgttccttctacgttcatcatttccttgcctaaagatggatt |
118 |
Q |
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| T |
1580 |
tatgtaaattagtttaacactgacattgaactaattaaattgctatatctgccagttttgttccttctacgttcatcatttccttgcctaaagatggatt |
1481 |
T |
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| Q |
119 |
aaatctgtttacttgtatagctcctaagacctgatagagtcgcttggttcgaatacaaagcctcctcgagccgttgtgctttgtgcttcagaagtaaaag |
218 |
Q |
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| T |
1480 |
aaatctgtttacttgtatagctcctaagacctgatagagtcgcttggttcgaatacaaagcctcctcgagccgttgtgctttgtgcttcagaagtaaaag |
1381 |
T |
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| Q |
219 |
ttgaacaggt---tattagagcatgaagagtagaataatctacc |
259 |
Q |
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| T |
1380 |
ttgaacaggttaatattagagcatgaagagtagaataatgtacc |
1337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0571 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 228
Target Start/End: Complemental strand, 6744 - 6529
Alignment:
| Q |
21 |
tgtaaattagtttaacactgacat------tgaactaattaaattgctatatctgccagttttgttccttctacgttcatcatttccttgcctaaagatg |
114 |
Q |
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| T |
6744 |
tgtaaattagttttacactgacatcatatgtaaactaattaaattgccatgtctgccagttttgttccttctacgttcattatttccttgtctaaagatg |
6645 |
T |
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| Q |
115 |
gattaaatctgtttacttgtatagctcctaagacctgat--agagtcgcttggttcgaatacaaagcctcctcgagccgttgtgctttgtgcttcagaag |
212 |
Q |
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| T |
6644 |
gattaaatccgtttacttttatagctgctaagatgggatagagagttgcttggttcgaattcaaagcatcctcgagccgttgttctttgtgctttagagg |
6545 |
T |
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| Q |
213 |
taaaagttgaacaggt |
228 |
Q |
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| T |
6544 |
agagagttgaacaggt |
6529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 14390025 - 14389951
Alignment:
| Q |
154 |
agagtcgcttggttcgaatacaaagcctcctcgagccgttgtgctttgtgcttcagaagtaaaagttgaacaggt |
228 |
Q |
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| T |
14390025 |
agagttgcttggttctaattcaaagtatcctcgagccgttgttctttgtgcttcagaggagaaagttgaacaggt |
14389951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 14390081 - 14390040
Alignment:
| Q |
73 |
gttttgttccttctacgttcatcatttccttgcctaaagatg |
114 |
Q |
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| T |
14390081 |
gttttgttccttctactttcattatttccttgtctaaagatg |
14390040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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