View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13460_high_3 (Length: 430)
Name: NF13460_high_3
Description: NF13460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13460_high_3 |
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| [»] scaffold1395 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 33 - 417
Target Start/End: Complemental strand, 43335283 - 43334899
Alignment:
| Q |
33 |
taatttgacaggtttaatacctcctggattaagttcttgtaagaaattggccttgttgaatttggctgataaccaattgattggtgcattgccaccagaa |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43335283 |
taatttgacaggtttaatacctcctggattaagttcttgtaagaaattggccttgttgaatttggctgataaccaattgactggtgcattgccaccagaa |
43335184 |
T |
|
| Q |
133 |
cttggtaatcttagcaatcttcaagtccttaaacttcaaatgaacaagcttaatggtactattccaattcaaatttcacaactgcaacagttgtctaccc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43335183 |
cttggtaatcttagcaatcttcaagtccttaaacttcaaatgaacaagcttaatggtactattccaattcaaatttcacaactgcaacagttgtctaccc |
43335084 |
T |
|
| Q |
233 |
tgaatttgagcctgaattctctgcatggaccaattccatctgagatgtcaaacagccttgtacttcttgacttgcaagggaacaatctcaacgggtctat |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43335083 |
tgaatttgagcctgaattctctgcatggaccaattccatctgagatgtcaaacagccttgtacttcttgacttgcaagggaacaatctcaacgggtctat |
43334984 |
T |
|
| Q |
333 |
accgtcgtccattggaaacatgggaaaacttatggaagtccaacttggagagaataagttaagtggtgatattccaaaaatgcct |
417 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
43334983 |
accgtcgtccattggaaacttgggaaaacttatggaagtccaacttggagaaaataagttaagtggggatattccaaaaatgcct |
43334899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 33 - 417
Target Start/End: Complemental strand, 43339718 - 43339334
Alignment:
| Q |
33 |
taatttgacaggtttaatacctcctggattaagttcttgtaagaaattggccttgttgaatttggctgataaccaattgattggtgcattgccaccagaa |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
43339718 |
taatttgacaggtttaatacctcctggattaagttcttgtaagaaattggccttgttgaatttggctgataaccaattgactggtgcattgccaccagaa |
43339619 |
T |
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| Q |
133 |
cttggtaatcttagcaatcttcaagtccttaaacttcaaatgaacaagcttaatggtactattccaattcaaatttcacaactgcaacagttgtctaccc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43339618 |
cttggtaatcttagcaatcttcaagtccttaaacttcaaatgaacaagcttaatggtactattccaattcaaatttcacaactgcaacagttgtctaccc |
43339519 |
T |
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| Q |
233 |
tgaatttgagcctgaattctctgcatggaccaattccatctgagatgtcaaacagccttgtacttcttgacttgcaagggaacaatctcaacgggtctat |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43339518 |
tgaatttgagcctgaattctctgcatggaccaattccatctgagatgtcaaacagccttgtacttcttgacttgcaagggaacaatctcaacgggtctat |
43339419 |
T |
|
| Q |
333 |
accgtcgtccattggaaacatgggaaaacttatggaagtccaacttggagagaataagttaagtggtgatattccaaaaatgcct |
417 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
43339418 |
accgtcgtccattggaaacttgggaaaacttatggaagtccaacttggagaaaataagttaagtggggatattccaaaaatgcct |
43339334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1395 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: scaffold1395
Description:
Target: scaffold1395; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 33 - 417
Target Start/End: Complemental strand, 1087 - 703
Alignment:
| Q |
33 |
taatttgacaggtttaatacctcctggattaagttcttgtaagaaattggccttgttgaatttggctgataaccaattgattggtgcattgccaccagaa |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1087 |
taatttgacaggtttaatacctcctggattaagttcttgtaagaaattggccttgttgaatttggctgataaccaattgactggtgcattgccaccagaa |
988 |
T |
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| Q |
133 |
cttggtaatcttagcaatcttcaagtccttaaacttcaaatgaacaagcttaatggtactattccaattcaaatttcacaactgcaacagttgtctaccc |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
987 |
cttggtaatcttagcaatcttcaagtccttaaacttcaaatgaacaagcttaatggtactattccaattcaaatttcacaactgcaacagttgtctaccc |
888 |
T |
|
| Q |
233 |
tgaatttgagcctgaattctctgcatggaccaattccatctgagatgtcaaacagccttgtacttcttgacttgcaagggaacaatctcaacgggtctat |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
887 |
tgaatttgagcctgaattctctgcatggaccaattccatctgagatgtcaaacagccttgtacttcttgacttgcaagggaacaatctcaacgggtctat |
788 |
T |
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| Q |
333 |
accgtcgtccattggaaacatgggaaaacttatggaagtccaacttggagagaataagttaagtggtgatattccaaaaatgcct |
417 |
Q |
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|| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
787 |
actgtcgtccattggaaacttgggaaaacttatggaagtccaacttggagaaaataagttaagtggggatattccaaaaatgcct |
703 |
T |
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