View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13460_low_4 (Length: 369)
Name: NF13460_low_4
Description: NF13460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13460_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 38633049 - 38633396
Alignment:
| Q |
11 |
caaaggaaccagaaaatgagtaacagaacataaactgaaaagtaccgagtgtgattgtannnnnnnnnn------gtgaatcggatatcctctatgcaca |
104 |
Q |
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| T |
38633049 |
caaaggaaccagaaaatgagtaacagaacataaactgaaaagtaccgagtgtgattgtattttttttttttttttgtgaatcggatatcctctatgcaca |
38633148 |
T |
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| Q |
105 |
actgcgcatattaaatctctcgagtcagatagaaccactttccacaagagatttagcactattgcgctgcattttcagggttctattcaaaccttggacc |
204 |
Q |
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| T |
38633149 |
actgcacatattaaatctctcgagtcagatagaaccactttccacaagagatttagcactattgcgctgcattttcagggttctattcgaaccttggacc |
38633248 |
T |
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| Q |
205 |
ttaagcatctcattcaagtgctctttggtgattcacatatttagtattcataattaaagttgtagataactgtttacttaagagttaattaaattagtga |
304 |
Q |
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| T |
38633249 |
ttaagcatctcattcaagtgctctttggtgattcacatatttagtattcataattaaagttgtagataactgtttacttaagagttaa-taaattagtga |
38633347 |
T |
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| Q |
305 |
agacatattgggtggattaataactgtattaactattaacctatgaaac |
353 |
Q |
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| T |
38633348 |
agacatattgggtggattaataactgtattaactattaacctatgaaac |
38633396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 35202996 - 35203054
Alignment:
| Q |
259 |
taaagttgtagataactgtttacttaagagttaattaaattagtgaagacatattgggtg |
318 |
Q |
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| T |
35202996 |
taaaggtgtatataactgttaa-ttaagagttaattaagttaatgaagacatattgggtg |
35203054 |
T |
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