View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13460_low_5 (Length: 348)
Name: NF13460_low_5
Description: NF13460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13460_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 3754215 - 3754534
Alignment:
| Q |
19 |
caggagtgactgaatatgaaaatggaaggaatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgataggtctagcatatggcga |
118 |
Q |
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| T |
3754215 |
caggagtgactgaatatgaaaatggaaggaatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgataggtctagcatatggcga |
3754314 |
T |
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| Q |
119 |
caaagatcttgtcgccattggatcaacgcttttagcgttggaaatcaatgctacacaaacttggtggcatgtgaaagttgaaaataatttgtatggagaa |
218 |
Q |
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| T |
3754315 |
caaagatcttgtcgccattggatcaacgcttttagcgttggaaatcaatgctacacaaacttggtggcatgtgaaagttgaaaataatttgtatggagaa |
3754414 |
T |
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| Q |
219 |
gagtttgcaaaagaaaataggattgttggtattttgtgggctaataagagagatagtaaactttggtgggctccttctgaatgtagagggtgtagggtta |
318 |
Q |
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| T |
3754415 |
gagtttgcaaaagaaaataggattgttggtattttgtgggctaataagagagatagtaaactttggtgggctccttctgaatgtagagggtgtagggtta |
3754514 |
T |
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| Q |
319 |
gtatccaagttatgcctttg |
338 |
Q |
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| T |
3754515 |
gtatccaagttatgcctttg |
3754534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 25 - 338
Target Start/End: Complemental strand, 4046017 - 4045704
Alignment:
| Q |
25 |
tgactgaatatgaaaatggaaggaatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgataggtctagcatatggcgacaaaga |
124 |
Q |
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| T |
4046017 |
tgaccgaatttgaacatggaagaaatcaagaaagttctagtgaagctgtgaatgcgtactattcagtagcattggttggtttagcatatggcgacaaaga |
4045918 |
T |
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| Q |
125 |
tcttgtcgccattggatcaacgcttttagcgttggaaatcaatgctacacaaacttggtggcatgtgaaagttgaaaataatttgtatggagaagagttt |
224 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||| | ||| ||| |
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| T |
4045917 |
tcttgtcgccactggatcaacgcttttagcgttggaagtcaatgccgtgcaaacttggtggcatgtgaaagctgaaaataatttgtatggtggagatttt |
4045818 |
T |
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| Q |
225 |
gcaaaagaaaataggattgttggtattttgtgggctaataagagagatagtaaactttggtgggctccttctgaatgtagagggtgtagggttagtatcc |
324 |
Q |
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| T |
4045817 |
gcgaaagagaatagaatagtgggaattttgtgggctaataaaagagatagtgcactatggtgggcttcatctgaatgtagagagtgtaggcttagtatac |
4045718 |
T |
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| Q |
325 |
aagttatgcctttg |
338 |
Q |
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| T |
4045717 |
aagttttgcctttg |
4045704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 6465103 - 6465023
Alignment:
| Q |
40 |
atggaaggaatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgataggtctagcatatggcgaca |
120 |
Q |
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| T |
6465103 |
atggaagaaatcaagagagtactagtgaagctgtgaatgcatactattcagcagctttgatgggtttggcatatggcgaca |
6465023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 6505250 - 6505175
Alignment:
| Q |
40 |
atggaaggaatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgataggtctagcatatgg |
115 |
Q |
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| T |
6505250 |
atggaaggaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgatgggaatagcatatgg |
6505175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 6516682 - 6516751
Alignment:
| Q |
207 |
ttgtatggagaagagtttgcaaaagaaaataggattgttggtattttgtgggctaataagagagatagta |
276 |
Q |
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| T |
6516682 |
ttgtatgatgaagagtttacaaaagagaataggatagtgggaattttgaggtctaataagagagagagta |
6516751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 1827401 - 1827461
Alignment:
| Q |
40 |
atggaaggaatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgat |
100 |
Q |
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| T |
1827401 |
atggaagaaatcaagagagcgctagtgaagcaatgaatgcatattattctgcagccttgat |
1827461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 6457143 - 6457083
Alignment:
| Q |
40 |
atggaaggaatcaagaaagttcaagtgaagcagtgaatgcatattattcagcagcattgat |
100 |
Q |
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||||||| |||||||| ||| | |||||||| ||||||||||| ||| | ||||||||||| |
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| T |
6457143 |
atggaagaaatcaagagagtactagtgaagctgtgaatgcatactatgctgcagcattgat |
6457083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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