View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13460_low_7 (Length: 338)
Name: NF13460_low_7
Description: NF13460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13460_low_7 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 3754550 - 3754890
Alignment:
| Q |
1 |
tctttgtttaatgatggtgtttatgctaaggagctagtggaatggacactacctt---tgaagaatgacacaaatgatgatagatggaaagggtttatct |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3754550 |
tctttgtttaatgatggtgtttatgctaaggagctagtggaatggacactcccttctttgaagaatgacacaaatgatgatagatggaaagggtttatct |
3754649 |
T |
|
| Q |
98 |
atgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcattcagtaatctcttatggtg |
197 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3754650 |
attctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcattcagtaatctcttatggtg |
3754749 |
T |
|
| Q |
198 |
gatccatagcagatgaggaatgttgcacaaaatcaatatgtttgggtcatgcgacgcttgctatcattttcaaaatgagtttaatatcaagatccaagga |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3754750 |
gatccatagcagatgaggaatgttgcacaaaatcaatatgtacgggtcatgcgacgctttttatcattttcaaaatgagcctaatatcaagatccaaggc |
3754849 |
T |
|
| Q |
298 |
tatgtggcctacaatctatgtaaataaaaaatacgaataaa |
338 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3754850 |
tatgtggccgacaatctatgtaaataaaaaatacgaataaa |
3754890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4045688 - 4045467
Alignment:
| Q |
1 |
tctttgtttaatgatggtgtttatgctaaggagctagtggaatggacactacctt---tgaagaatgacacaaatgatgatagatggaaagggtttatct |
97 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| |||||||||||| | |||| | ||||| | || ||| ||| | ||||||||||||| || |
|
|
| T |
4045688 |
tctttgttcaacgatggtgtttatgctaaggagcttgtggaatggacagtgccttctttcaagaacaaaactaatattgaaggttggaaagggtttacct |
4045589 |
T |
|
| Q |
98 |
atgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcattcagtaatctcttatggtg |
197 |
Q |
| |
|
||||||||||||| |||||||||| | |||||||||||||| |||||||||||| ||||||||| | |||||||||| || |||||| | |||||||| |
|
|
| T |
4045588 |
atgctttgcaaggtgtttatgataagaagaatgcattgaagaatattagaatgttgaaaggttttgatgatggaaactcttttagtaatttgttatggtg |
4045489 |
T |
|
| Q |
198 |
gatccatagcagatgaggaatg |
219 |
Q |
| |
|
||| ||||| || ||| ||||| |
|
|
| T |
4045488 |
gattcatagtaggtgaagaatg |
4045467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 6464707 - 6464581
Alignment:
| Q |
80 |
gatggaaagggtttatctatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcatt |
179 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||| |||||||||| |||| || |||||||||||| |||| ||| | ||||||| | ||||||||||||| |
|
|
| T |
6464707 |
gatggaaagggtttgtctatgccttggaaggagtttatgataatgaaagtggattgaagaagataagaagcttgaatggttttgatgatggaaactcatt |
6464608 |
T |
|
| Q |
180 |
cagtaatctcttatggtggatccatag |
206 |
Q |
| |
|
| |||||||||||||||||| ||||| |
|
|
| T |
6464607 |
gactaatctcttatggtggattcatag |
6464581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 200
Target Start/End: Complemental strand, 6496047 - 6495927
Alignment:
| Q |
80 |
gatggaaagggtttatctatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcatt |
179 |
Q |
| |
|
|||||||||||||| | ||||| || ||||||||||||||||| ||||||||||||||||| || |||| || |||| |||| | ||||||||||||| |
|
|
| T |
6496047 |
gatggaaagggtttgtatatgccttacaaggaatttatgataaggaaaatgcattgaagaatataagaaatttaaaaggatttgatgatggaaactcatt |
6495948 |
T |
|
| Q |
180 |
cagtaatctcttatggtggat |
200 |
Q |
| |
|
| ||||||||| |||||||| |
|
|
| T |
6495947 |
gactaatctcttgtggtggat |
6495927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 6462625 - 6462745
Alignment:
| Q |
80 |
gatggaaagggtttatctatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcatt |
179 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||||||||||||| |||| |||||||||||| || |||| || |||| |||| | ||||||||||||| |
|
|
| T |
6462625 |
gatggaaagggtttgtatatgctttacaaggaatttatgataaggaaactgcattgaagaatataagaaatttaaaaggatttgatgatggaaactcatt |
6462724 |
T |
|
| Q |
180 |
cagtaatctcttatggtggat |
200 |
Q |
| |
|
| |||||| || |||||||| |
|
|
| T |
6462725 |
gactaatcttttgtggtggat |
6462745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 80 - 210
Target Start/End: Original strand, 6473847 - 6473977
Alignment:
| Q |
80 |
gatggaaagggtttatctatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcatt |
179 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||||||||| |||| || ||||||||| || | || ||| | | |||| | ||||||| ||||| |
|
|
| T |
6473847 |
gatggaaaggttttgtctatgcattgcaaggaatttatgataatgaaagtggattgaagaatataaaaagtttgaatagatttgatgatggaaattcatt |
6473946 |
T |
|
| Q |
180 |
cagtaatctcttatggtggatccatagcaga |
210 |
Q |
| |
|
| |||||||||||||||||| ||||||||| |
|
|
| T |
6473947 |
gactaatctcttatggtggattcatagcaga |
6473977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 6525743 - 6525625
Alignment:
| Q |
82 |
tggaaagggtttatctatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcattca |
181 |
Q |
| |
|
||||| |||||| | ||||| |||||||| ||||||||||| |||| |||| | ||||||| |||| |||| | ||||||| | ||||||||||||| | |
|
|
| T |
6525743 |
tggaaggggtttgtttatgccttgcaagggatttatgataatgaaagtgcacagcagaagataagaaagttgaagggttttgatgatggaaactcattga |
6525644 |
T |
|
| Q |
182 |
gtaatctcttatggtggat |
200 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
6525643 |
ctaatctattatggtggat |
6525625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 210
Target Start/End: Complemental strand, 6504824 - 6504721
Alignment:
| Q |
107 |
aaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcattcagtaatctcttatggtggatccatag |
206 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| |||| ||| | ||||||| | ||||||||| || | |||||| || |||||||| ||||| |
|
|
| T |
6504824 |
aaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatggtggaaactctttgactaatcttttgtggtggattcatag |
6504725 |
T |
|
| Q |
207 |
caga |
210 |
Q |
| |
|
|||| |
|
|
| T |
6504724 |
caga |
6504721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 6516934 - 6517043
Alignment:
| Q |
97 |
tatgctttgcaaggaatttatgataaagaaaatgcattgaagaagattagaatgttggaaggttttgctaatggaaactcattcagtaatctcttatggt |
196 |
Q |
| |
|
||||| ||| |||||||||||||||| |||| ||||||||||||||| |||| ||| | ||||||| | ||||||||| || | |||||| || |||| |
|
|
| T |
6516934 |
tatgcattggaaggaatttatgataatgaaagtgcattgaagaagataagaagcttgaatggttttgatggtggaaactctttgactaatcttttgtggt |
6517033 |
T |
|
| Q |
197 |
ggatccatag |
206 |
Q |
| |
|
|||| ||||| |
|
|
| T |
6517034 |
ggattcatag |
6517043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University