View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13461_low_3 (Length: 321)
Name: NF13461_low_3
Description: NF13461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13461_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 29688168 - 29688453
Alignment:
| Q |
22 |
agtgcacgtggtttgttatctcacttggggcttttctcattaagagctaatacgtggaaggaaatggagggtggtgacaatttgcgttattcacagcagt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29688168 |
agtgcacgtggtttgttatctcacttggggcttttctcattaagagctaatacgtggaaggaaatggagggtggtgacaatttgcgttattcacagcagt |
29688267 |
T |
|
| Q |
122 |
gtatgtattctagagtagattcactcctaaatggggttattcactggttggcttgtcattatgatagatcaatgaatgttattgttggatttcatttaac |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29688268 |
gtatgtattctagagtagattcactcctaaatggggttattcactggttggcttttcattatgatagatcaatgaatgttattgttggatttcatttaac |
29688367 |
T |
|
| Q |
222 |
ggaaaggaaacttatagagttgcctttgcctattggtataaataatggtcctagagtgtatgatttatggctattcagatgatgtc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29688368 |
ggaaaggaaacttatagagttgcctttgcctattggtataaataatggtcctagagtgtatgatttatggctattcagaggatgtc |
29688453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 275
Target Start/End: Original strand, 29696400 - 29696525
Alignment:
| Q |
150 |
aaatggggttattcactggttggcttgtcattatgatagatcaatgaatgttattgttggatttcatttaacggaaaggaaacttatagagttgcctttg |
249 |
Q |
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|||||||| ||||||||||||||||| || | |||||| ||||||| ||||||||||| |||||||||| |||||||||||| ||||||||| |||| |
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| T |
29696400 |
aaatggggctattcactggttggcttttcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaaggaaacttctagagttgcgtttg |
29696499 |
T |
|
| Q |
250 |
cctattggtataaataatggtcctag |
275 |
Q |
| |
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|| | || |||| ||||||||||| |
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| T |
29696500 |
ccaaatgagataatcaatggtcctag |
29696525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 29712339 - 29712237
Alignment:
| Q |
149 |
taaatggggttattcactggttggcttgtcattatgatagatcaatgaatgttattgttggatttcatttaacggaaaggaaacttatagagttgccttt |
248 |
Q |
| |
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||||||||| |||||||||||||||| | |||||||| ||||| |||||||||| |||| | |||||||| | ||||| | ||| |||||||| |||| |
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| T |
29712339 |
taaatggggctattcactggttggctctttgttatgatatatcaacgaatgttattcttggctatcatttaatgcaaagggagcttctagagttgacttt |
29712240 |
T |
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| Q |
249 |
gcc |
251 |
Q |
| |
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||| |
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| T |
29712239 |
gcc |
29712237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 42562220 - 42562131
Alignment:
| Q |
151 |
aatggggttattcactggttggcttgtcattatgatagatcaatga--atgttattgttggatttcatttaacggaaaggaaacttatagag |
240 |
Q |
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||||||| |||||||||||||||| || | |||||| || |||| |||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
42562220 |
aatggggctattcactggttggctcttcgtcatgatatat--atgaccatgttattgttgcctttcatttaacggaaaggaaacttctagag |
42562131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 49044082 - 49043994
Alignment:
| Q |
151 |
aatggggttattcactggttggcttgtcattatgatagatcaatgaatgttattgttggatttcatttaacggaaaggaaacttataga |
239 |
Q |
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||||||| ||||||||||||||||| |||| |||| |||||||||||||||||||| ||| |||||| |||||||||||| |||| |
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| T |
49044082 |
aatggggctattcactggttggcttttcatcttgatttatcaatgaatgttattgttgcctttgatttaattgaaaggaaacttttaga |
49043994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Complemental strand, 49048460 - 49048392
Alignment:
| Q |
159 |
tattcactggttggcttgtcattatgatagatcaatgaatgttattgttggatttcatttaacggaaag |
227 |
Q |
| |
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||||||||||||||||| |||| |||| ||| |||||||||||||||| ||| ||||||||||||| |
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| T |
49048460 |
tattcactggttggcttttcatcttgatttatcgatgaatgttattgttgcctttgatttaacggaaag |
49048392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 48852852 - 48852955
Alignment:
| Q |
151 |
aatggggttattcactggttggcttgtcattatgatagatcaatgaat---gttattgttggatttcatttaacggaaaggaaacttatagagttgcctt |
247 |
Q |
| |
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||||||| |||||| |||||||||| || | ||||| | |||||||| |||||||| | ||| |||||| ||||||||||||| |||||||| ||| |
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| T |
48852852 |
aatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaacttttagagttgtctt |
48852951 |
T |
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| Q |
248 |
tgcc |
251 |
Q |
| |
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|||| |
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| T |
48852952 |
tgcc |
48852955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 11005776 - 11005718
Alignment:
| Q |
190 |
tcaatgaatgttattgttggatttcatttaacggaaaggaaacttatagagttgccttt |
248 |
Q |
| |
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|||||| ||||||||||||| ||| ||||| ||||||||||||| ||||| ||||||| |
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| T |
11005776 |
tcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttt |
11005718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 47451793 - 47451717
Alignment:
| Q |
151 |
aatggggttattcactggttggcttgtcattatgatagatcaatgaatgttattgttggatttcatttaacggaaag |
227 |
Q |
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||||||| |||| | |||||||||| || | |||||| ||| ||||||||||||| || |||| |||||| |||||| |
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| T |
47451793 |
aatggggctatttattggttggcttttcgtcatgatatatccatgaatgttattgctgcatttgatttaatggaaag |
47451717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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