View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13461_low_4 (Length: 261)
Name: NF13461_low_4
Description: NF13461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13461_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 31911925 - 31912177
Alignment:
| Q |
1 |
atttcttattctatatatgaatatgaattgttttgaaagcagaagaaaaaaggcaacatacacttcataatatccaaaagtatcacaacgtaaaaaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31911925 |
atttcttattctatatatgaatatgaattgttttgaaagcagaagaaaaaaggcaacatacacttcataatatccaaaagtatcacaacgtaaaaaacat |
31912024 |
T |
|
| Q |
101 |
cctttcaataatagaaattaaagagcacaaattgaagaagttgataaccaataaaatctaaaccaacatgctaagagtttattaattacactcactctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31912025 |
cctttcaataatagaaattaaagagcacaaattgaagaagttgataaccaataaaatctaaaccaacatgctaagagtttattaattacactcactct-a |
31912123 |
T |
|
| Q |
201 |
ttatctcccacagtgatttcaaatcttattgaacaacatcatattcttcgacat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
31912124 |
ttatctcccacagtgatttcaaatcttattgaacaacatcattttctttgacat |
31912177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University