View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13462_high_1 (Length: 738)
Name: NF13462_high_1
Description: NF13462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13462_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 206 - 721
Target Start/End: Complemental strand, 52592800 - 52592285
Alignment:
| Q |
206 |
taatagcccaatatagtctataaactaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttccccacctccaaaaaccgtattttgt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
52592800 |
taatagcccaatatagtctataaactaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttccccacctccgaaaaccgtattttgt |
52592701 |
T |
|
| Q |
306 |
attccataataatcataatgtgcttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatcatcgccaagacaattgtttcccatt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52592700 |
attccataataatcataatgtgcttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatcatcgccaagacaattgtttcccatt |
52592601 |
T |
|
| Q |
406 |
gaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatcttgtcttgtaacttagaatgtatcc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52592600 |
gaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatcttgtcttgtaacttagaatgtatcc |
52592501 |
T |
|
| Q |
506 |
caaccaagcattctcttcagggtcctatatggatatgttcacctcgagtcctttgttaccttacaattactacaatgaatctgtagcagaacaaaatgga |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52592500 |
caaccaagcattctcttcagggtcctatatggatatgttcacctcgagtcctttgttaccttacaattactacaatgaatctgtagcagaacaaaatgga |
52592401 |
T |
|
| Q |
606 |
atcaagtttaacacgcctataggcgacacagtgactatgcaatccattgatgagcattccaatgcttacaactctcatgtagatgagcaaagtatacaat |
705 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52592400 |
atcaagtttaacatgcctataggcgacacagtgactatgcaatccattgatgagcattccaatgcttacaactctcatgtagatgagcaaagtatacaat |
52592301 |
T |
|
| Q |
706 |
gccaagagttatctct |
721 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
52592300 |
gccaagagttatctct |
52592285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 52592988 - 52592866
Alignment:
| Q |
16 |
aatatcaaaaacccggatttgaataaatgataaccaaacagggaacaatccattatacaaataaattatgttcttatatgcttgaaatgctttgtttttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
52592988 |
aatatcaaaaacccggatttgaataaatgataaccaaacagggaacaatccattatacaaataaattctgttcttacatgcttgaaatgctttgtttttt |
52592889 |
T |
|
| Q |
116 |
atggttgaaattacactggtcac |
138 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
52592888 |
atggttgaaattacactggtcac |
52592866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University