View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13462_high_3 (Length: 533)
Name: NF13462_high_3
Description: NF13462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13462_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 44943832 - 44944346
Alignment:
| Q |
1 |
catcactctcctttctgaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44943832 |
catcactctcctttctgaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaatgatgtcaaacagcaacaagc |
44943931 |
T |
|
| Q |
101 |
aaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaagcccagggaccaagagtgactagcacgattcaatgtc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
44943932 |
aaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaatccaagggaccaagagtgactagcacgattcaatgtc |
44944031 |
T |
|
| Q |
201 |
ttagcaatatattccatatatgcctttttatctctgagtgtaggtgcggtgattaaaaaactgacatgacaatagcaccttatagactgaacattgcata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44944032 |
ttagcaatatattccatatatgcctttttatctcggagtgtaggtgcggtgattaaaaaactgacatgacaatagcaccttatagactgaacattgcata |
44944131 |
T |
|
| Q |
301 |
aaaatgcaacaaggaagcaaatggtaattgaaatacgtttgattgaagaagtactttgaagtatggaagatgtatcatcagaactccatgaactgctagc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44944132 |
aaaatgcaacaaggaagcaaatggtaatcgaaatacgtttgattgaagaagtactttgaagtatggaagatgtatcatcagaactccatgaactgctagc |
44944231 |
T |
|
| Q |
401 |
aaaaattccaataagtgaacttaatgtgattgctgttgtagcaagaagattagacgccatgatattgttgcggatagtttggaccgccaaaacaccgttc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44944232 |
aaaaattccaataagtgaacttaatgtgattgctgttgtagcaagaagattagacgccatgatattgttgcggatagtttggacccccaaaacaccgttc |
44944331 |
T |
|
| Q |
501 |
ttgaagggatcctga |
515 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44944332 |
ttgaagggatcctga |
44944346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 44945486 - 44946003
Alignment:
| Q |
1 |
catcactctcctttctgaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44945486 |
catcactctcctttctgaatgagtcactatgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaatgatgtcaaacagcaacaagc |
44945585 |
T |
|
| Q |
101 |
aaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaagcccagggaccaagagtgactagcacgattcaatgtc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||| |||||||||||| |
|
|
| T |
44945586 |
aaacattggtataggcccataaatccataggaagagaggaaatgataagtaaaatgctcgcaatccaagggaccaggagtaactagcgcgattcaatgtc |
44945685 |
T |
|
| Q |
201 |
ttagcaatatattccatatatgcctttttatctctgagtgtaggtgcggtgattaaaaaactgacatgacaatagcaccttatagactgaacattgcata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44945686 |
ttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgacatgacaatagcatcttatagactgaacattgcata |
44945785 |
T |
|
| Q |
301 |
aaaatgcaacaaggaagcaaatggtaattgaaatacgtttgattgaagaagtactttgaagtatggaa---gatgtatcatcagaactccatgaactgct |
397 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
44945786 |
aaaatgcaacaaggaagcagatggtaatcgaaatgtgtttgattgaagaagtactttgaagtatggaagatgatgtatcatcagaactccacgaactgct |
44945885 |
T |
|
| Q |
398 |
agcaaaaattccaataagtgaacttaatgtgattgctgttgtagcaagaagattagacgccatgatattgttgcggatagtttggaccgccaaaacaccg |
497 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
44945886 |
agcaaaaattccaataagtgaacttagtgtgatagctgttgtagaaagaagagtagacgccatgatattgttgcggattgtttggatcgccaaaacaccg |
44945985 |
T |
|
| Q |
498 |
ttcttgaagggatcctga |
515 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
44945986 |
ttcttggagggatcctga |
44946003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 319
Target Start/End: Original strand, 44940692 - 44940981
Alignment:
| Q |
30 |
tgaagatcccttgtgattctagttgttgtatccaaaaagtacaaactgaaagatgtcaaacagcaacaagtaaacattggtataggcccataaatccata |
129 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| ||||||||| | || ||||| || || ||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
44940692 |
tgaagatcccttgtgatttgagtggttgtatccaagaagtacaaaataaatgatgtgaagcaagaacaaataaacatgggtatgggcccataaatccata |
44940791 |
T |
|
| Q |
130 |
ggaagagaggaaatgataagtaaaatgctcgcaagcccagggaccaagagtgactagcacgattcaatgtcttagcaatatattccatatatgccttttt |
229 |
Q |
| |
|
||| || |||| ||| ||| || || | ||| || || |||||||| | ||| |||| |||||||| || |||| |||||| ||| | ||||||| |
|
|
| T |
44940792 |
ggacaagtggaattgacgtgtagaaagccctcaaaccaagagaccaagaataacttccacggttcaatgtttttgcaacatattcgataaaatccttttt |
44940891 |
T |
|
| Q |
230 |
atctctgagtgtaggtgcggtgattaaaaaactgacatgacaatagcaccttatagactgaacattgcataaaaatgcaacaaggaagca |
319 |
Q |
| |
|
| |||||| ||||| ||||||| ||||| ||||| |||| | |||||||| || | ||| |||| |||||||||||||||||| |
|
|
| T |
44940892 |
gccattgagtgcaggtgtattgattaagaaactcacatgtgcatagtatcttatagattgcatattacatagaaatgcaacaaggaagca |
44940981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 394 - 490
Target Start/End: Original strand, 44941059 - 44941155
Alignment:
| Q |
394 |
tgctagcaaaaattccaataagtgaacttaatgtgattgctgttgtagcaagaagattagacgccatgatattgttgcggatagtttggaccgccaa |
490 |
Q |
| |
|
|||| ||||||| |||||| |||||||||| |||||||||||||||||| || ||| |||| ||||| |||||||||||||| ||||| || ||||| |
|
|
| T |
44941059 |
tgcttgcaaaaactccaattagtgaacttagtgtgattgctgttgtagctagtagagtagatgccattatattgttgcggattgtttgaacagccaa |
44941155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University