View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13462_high_9 (Length: 239)
Name: NF13462_high_9
Description: NF13462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13462_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 3746136 - 3746018
Alignment:
| Q |
101 |
tcaccatcatttgaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagat |
200 |
Q |
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| T |
3746136 |
tcaccatcatttgaaaaagaagaaacttatgattttgttcgttcaatagaccccaaattgttacacctaaacaaccaagaaaagctaagtcatttcagat |
3746037 |
T |
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| Q |
201 |
tcttttggcatgacatcat |
219 |
Q |
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||||||||||||||||||| |
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| T |
3746036 |
tcttttggcatgacatcat |
3746018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 3751948 - 3751841
Alignment:
| Q |
106 |
atcatttgaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttt |
205 |
Q |
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|||||| |||||| ||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||||||| | |
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| T |
3751948 |
atcattagaaaaacaagaaacttttgattttgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctat |
3751849 |
T |
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| Q |
206 |
tggcatga |
213 |
Q |
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|||||||| |
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| T |
3751848 |
tggcatga |
3751841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 3781314 - 3781213
Alignment:
| Q |
113 |
gaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatg |
212 |
Q |
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|||||| |||| |||| |||||||||||| | ||||| | ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
3781314 |
gaaaaacaagacactttcgattttgttcgtccgatagatcgcaaattgttaggcctaaacaagaaagaaaagctaagtcatttcagattctattggcatg |
3781215 |
T |
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| Q |
213 |
ac |
214 |
Q |
| |
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|| |
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| T |
3781214 |
ac |
3781213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 3777006 - 3776898
Alignment:
| Q |
108 |
catttgaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttg |
207 |
Q |
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|||| ||||||||||| || | ||||||||||||| ||||||| | || |||||| ||||||||| || ||||||||||||||||||| ||| | ||| |
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| T |
3777006 |
cattagaaaaagaagatacctttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattatattg |
3776907 |
T |
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| Q |
208 |
gcatgacat |
216 |
Q |
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||||||||| |
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| T |
3776906 |
gcatgacat |
3776898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 3762926 - 3762823
Alignment:
| Q |
113 |
gaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatg |
212 |
Q |
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||||| |||||||||| ||||||||||||| ||||||||| || |||||| ||||||||| || ||||| ||||| ||||| ||||||| ||||||| |
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| T |
3762926 |
gaaaatgaagaaacttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcatg |
3762827 |
T |
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| Q |
213 |
acat |
216 |
Q |
| |
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|||| |
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| T |
3762826 |
acat |
3762823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 3767313 - 3767227
Alignment:
| Q |
130 |
tgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatgacat |
216 |
Q |
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||||||||||||| ||||||| | || |||||| ||||||||| || ||||||||||||||||||| ||| | |||||||||||| |
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| T |
3767313 |
tgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacat |
3767227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3746235 - 3746195
Alignment:
| Q |
1 |
catcaaaatcactcttaaccccaccaccatgcctacccaaca |
42 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3746235 |
catcaaaatcactct-aaccccaccaccatgcctacccaaca |
3746195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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