View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13462_low_10 (Length: 247)
Name: NF13462_low_10
Description: NF13462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13462_low_10 |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 33382969 - 33383186
Alignment:
| Q |
12 |
ggaggagcagagaagatggagaagattggctaccagaaggatttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgtt |
111 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33382969 |
ggagaagcaaagaagatggagaagattggctaccagaaggatttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgtt |
33383068 |
T |
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| Q |
112 |
gattcttgaacacgaagcaattggagcatttgtgactcattgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcct |
211 |
Q |
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| T |
33383069 |
gattcttgaacacgaagcaattggagcatttgtgactcattgtggatggaattcagttttagaaggtgtggttgctggggtacctatcgttacttggcct |
33383168 |
T |
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| Q |
212 |
gttgctgctgaacaattt |
229 |
Q |
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|||||||||||||||||| |
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| T |
33383169 |
gttgctgctgaacaattt |
33383186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 52 - 229
Target Start/End: Complemental strand, 33391045 - 33390868
Alignment:
| Q |
52 |
atttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaacacgaagcaattggagcatttgtgactcat |
151 |
Q |
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| T |
33391045 |
atttgagaaaagaatgaaaggaaagggactaattataagaggttggtctcctcaacttttgattcttcaacataaagctattggagcaattgtgactcat |
33390946 |
T |
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| Q |
152 |
tgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcctgttgctgctgaacaattt |
229 |
Q |
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| T |
33390945 |
tgtggatggaacttaactttggaaagtgtagctgctggagtacctatgattacttggcctatagctcctgagcaattt |
33390868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 27688842 - 27688651
Alignment:
| Q |
22 |
agaagatggagaagattggctaccagaaggatttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaa |
121 |
Q |
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| T |
27688842 |
agaagatggagatgaatggctacctgaaggattcgaggaaagaacggaaggaaaaggactaattataagaggttggtctccacaagtgatgattcttgaa |
27688743 |
T |
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| Q |
122 |
cacgaagcaattggagcatttgtgactcattgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcctgt |
213 |
Q |
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| T |
27688742 |
catgaagcaatcggggcatttgtgacgcattgcggatggaattcggttttagaaggagtggtagctggagtacctatgattacttggcctgt |
27688651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 211
Target Start/End: Original strand, 18989456 - 18989615
Alignment:
| Q |
52 |
atttgagaaaagaatggaaggaaagggactaattataagaggttggtcgccgcaaacgttgattcttgaacacgaagcaattggagcatttgtgactcat |
151 |
Q |
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| T |
18989456 |
atttgagaaaataatgaaaggaaaaggactaattataagaggttggcctcttcaacttttgatttttcaacataaagctattggagcatttgtgactcat |
18989555 |
T |
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| Q |
152 |
tgtggatggaattcagttttagaaggtgtagttgctggggtacctatcgttacttggcct |
211 |
Q |
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| T |
18989556 |
tgtggatggaacttaactttggaaagtgtggctgctggagtacctatgattacttggcct |
18989615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 19001890 - 19001937
Alignment:
| Q |
52 |
atttgagaaaagaatggaaggaaagggactaattataagaggttggtc |
99 |
Q |
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| T |
19001890 |
atttgagaaaaggatgaaaggaaacggactaattataagaggttggtc |
19001937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 11686 - 11646
Alignment:
| Q |
129 |
caattggagcatttgtgactcattgtggatggaattcagtt |
169 |
Q |
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| T |
11686 |
caattggtgcatttttgactcattgtggttggaattcagtt |
11646 |
T |
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