View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13462_low_11 (Length: 240)
Name: NF13462_low_11
Description: NF13462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13462_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29362723 - 29362944
Alignment:
| Q |
1 |
tcaattatttgtataagatttggactttattattcttcacaacactgacacttttttatgattcaaccaggtgacattggaattgctgtttcatttgaag |
100 |
Q |
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| T |
29362723 |
tcaattatttgtataagatttggactttattattcttcacaacactgacacttttttatgattcaaccaggtgacattggaattgctgtttcatttgaag |
29362822 |
T |
|
| Q |
101 |
caatttgattgacattaaaacatacttttctgatatatcattccgtcatgacctgtttccctttctcgttcagtaagacaccgtcttcttcaagacagca |
200 |
Q |
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| T |
29362823 |
caatttgattgacattaaaacatacttttctgatacatcattccgtcatgacctgtttccctttctcgttcagtaagacaccgtcttcttcaagacagca |
29362922 |
T |
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| Q |
201 |
tccagacaacgatgaaggtaag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
29362923 |
tccagacaacgatgaaggtaag |
29362944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 222
Target Start/End: Original strand, 29356185 - 29356278
Alignment:
| Q |
129 |
tctgatatatcattccgtcatgacctgtttccctttctcgttcagtaagacaccgtcttcttcaagacagcatccagacaacgatgaaggtaag |
222 |
Q |
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||||||| |||||||| ||||||||||||| |||| || || || |||||| |||||||||||||||| |||||||||| |||||||||||| |
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| T |
29356185 |
tctgatacatcattccatcatgacctgttttccttgcttatttagcaagacatcgtcttcttcaagacaaaatccagacaatgatgaaggtaag |
29356278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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