View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13462_low_3 (Length: 644)
Name: NF13462_low_3
Description: NF13462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13462_low_3 |
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| [»] scaffold1861 (2 HSPs) |
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Alignment Details
Target: scaffold1861 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold1861
Description:
Target: scaffold1861; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 141 - 423
Target Start/End: Original strand, 35 - 317
Alignment:
| Q |
141 |
gagttcaagtaaaattaacaaaaaatgtgatttagcaacttttagtacaggttgccagtcaaggaattaaaataagtggatgatgtgtctaataatcatt |
240 |
Q |
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| T |
35 |
gagttcaagtaaaattaacaaaaaatgtgatttagcaacttttagtatcggttgccactcaaggaattaaaataagtggatgatgtatctaataatcatt |
134 |
T |
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| Q |
241 |
ggagtgtgttgaaagagagtgttaaaatgagcgactctaacatttctctattgcgatttatacaattattctttcaagttatgtacttgtgttacgatca |
340 |
Q |
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| T |
135 |
ggagtgtgttgaaagaaagtgttaaaatgagtgattctaacatttctctactgtgctttatacaattattctttcaagggatgtacttgtgttatgatca |
234 |
T |
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| Q |
341 |
tggcgaacgcgtagtgaggtttttatttcactttaattacctaacatccagttatagacaacattatgtttattatatatgtg |
423 |
Q |
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| T |
235 |
tggcgaacacctagtgaggttttcttttcactttaattacctaacatccagttatagacaacattatgtttattatatatgtg |
317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1861; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 445 - 630
Target Start/End: Original strand, 412 - 597
Alignment:
| Q |
445 |
gtaaaaacaaacattttcagcacaacgggtgaaaccacagtaacggtaactagagtcggggtcgaatctacaacagatgaacgaacaacttgtagtgttg |
544 |
Q |
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| T |
412 |
gtaaaaacaaacattttcagcacaacgggtgaaaccaccgtaacggtaaccagagtcggggtcgactctacaaaagatgaacgaacaacttgtagtgttg |
511 |
T |
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| Q |
545 |
gaggggagatgattgtaactgtaattgaaggttggggagcatccgcaaacaatcctgtcattggagctagaagcaatgaggatttt |
630 |
Q |
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| T |
512 |
gaggggagatgattgtaactgtaattgaaggttggggagcaaccgcaaacattactgtcattggaactagaagcaatgaggatttt |
597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 257
Target Start/End: Original strand, 49977594 - 49977732
Alignment:
| Q |
116 |
gagcttggagttcaacgaggaggatgagttcaagtaaaattaacaaaaaatgtgatttagcaacttttagtacaggttgccagtcaaggaattaaaataa |
215 |
Q |
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| T |
49977594 |
gagcttgaagttcaacgagaaggatgtgttcgagtaaaataaaaaaataac---atttaacaacttgtattaccggtaacctgtcaaggaattaaaataa |
49977690 |
T |
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| Q |
216 |
gtggatgatgtgtctaataatcattggagtgtgttgaaagag |
257 |
Q |
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| T |
49977691 |
gtgggtgatgtggctaattgtcatttgagtgtgttaaaagag |
49977732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 37085406 - 37085339
Alignment:
| Q |
160 |
aaaaaatgtgatttagcaacttttagtacaggttgccagtcaaggaattaaaataagtggatgatgtg |
227 |
Q |
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| T |
37085406 |
aaaaaatgtcatttagcaacctctagtaccggttaccagtcaaggaattaaaataagcgggtgatgtg |
37085339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 30249397 - 30249455
Alignment:
| Q |
211 |
aataagtggatgatgtgtctaataatcattggagtgtgttgaaagagagtgttaaaatg |
269 |
Q |
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| T |
30249397 |
aataaggggatgatgtgtctaattattattggagtgtgttaaaagaaagtgttaaaatg |
30249455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 39217688 - 39217636
Alignment:
| Q |
198 |
gtcaaggaattaaaataagtggatgatgtgtctaataatcattggagtgtgtt |
250 |
Q |
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| T |
39217688 |
gtcaaggaattaaaataagtgggtgatgtggctaattatcatttgaatgtgtt |
39217636 |
T |
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