View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13462_low_5 (Length: 462)

Name: NF13462_low_5
Description: NF13462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13462_low_5
NF13462_low_5
[»] chr6 (6 HSPs)
chr6 (167-444)||(898144-898421)
chr6 (13-115)||(1223642-1223744)
chr6 (170-230)||(1194549-1194609)
chr6 (113-147)||(898092-898126)
chr6 (170-230)||(1183793-1183853)
chr6 (47-90)||(26207961-26208004)
[»] chr3 (5 HSPs)
chr3 (13-115)||(54812929-54813031)
chr3 (13-115)||(46427972-46428074)
chr3 (13-115)||(42793902-42794004)
chr3 (19-105)||(27156853-27156939)
chr3 (19-105)||(54346161-54346247)
[»] chr8 (2 HSPs)
chr8 (13-115)||(44145135-44145237)
chr8 (19-105)||(26617411-26617497)
[»] chr7 (6 HSPs)
chr7 (13-115)||(24472864-24472966)
chr7 (22-105)||(29214418-29214501)
chr7 (19-105)||(8020431-8020517)
chr7 (14-115)||(31047546-31047647)
chr7 (20-102)||(38111362-38111444)
chr7 (42-90)||(45753388-45753436)
[»] chr5 (2 HSPs)
chr5 (13-115)||(18882796-18882898)
chr5 (20-102)||(14024272-14024354)
[»] chr2 (3 HSPs)
chr2 (19-105)||(40197073-40197159)
chr2 (19-105)||(7305768-7305854)
chr2 (22-108)||(42161748-42161834)
[»] chr1 (4 HSPs)
chr1 (19-105)||(5308068-5308154)
chr1 (19-105)||(23949124-23949210)
chr1 (19-105)||(23085598-23085684)
chr1 (19-105)||(23722713-23722799)
[»] chr4 (3 HSPs)
chr4 (19-105)||(36895103-36895189)
chr4 (41-105)||(34390514-34390578)
chr4 (20-102)||(1368771-1368853)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 167 - 444
Target Start/End: Original strand, 898144 - 898421
Alignment:
Q  167 gggacattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgctatacccaaaactaaaggcattgttcaactcatcgata 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898144 gggacattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgctatacccaaaactaaaggcattgttcaactcatcgata 898243  T
Q  267 gttgatattctcttgggatcaaaaacaaaatgtagcactcttaattttgaaaccctctatactcagctacctcaaaccatcatagacgaaattattaacc 366  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898244 gttgatattctgttgggatcaaaaacaaaatgtagcactcttaattttgaaaccctctatactcagctacctcaaaccatcatagacgaaattattaacc 898343  T
Q  367 tttgtccagatttcaatcccaatagagaaaatgttttatatttggccgaacaattccaactttttcgacacaaccaag 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  898344 tttgtccagatttcaatcccaatagagaaaatgttttatatttggccgaacaattccaactttttcgacacaaccaag 898421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 1223642 - 1223744
Alignment:
Q  13 aatatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatccca 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  1223642 aatatgaagccatacatgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcatcatttccacaacatgggcaagtaggagaaatccca 1223741  T
Q  113 aca 115  Q
    |||    
T  1223742 aca 1223744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 1194549 - 1194609
Alignment:
Q  170 acattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgcta 230  Q
    ||||||||||||| || |||||||||||| |||||||||||||||||||||||||| ||||    
T  1194549 acattcaaaaagttttccaatgcactagtcagggtaaattttgatgatccctcttttgcta 1194609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 147
Target Start/End: Original strand, 898092 - 898126
Alignment:
Q  113 acaactgattctttttactttgatgtcaaagttga 147  Q
    |||||||||||||||||||||||||||||||||||    
T  898092 acaactgattctttttactttgatgtcaaagttga 898126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 1183793 - 1183853
Alignment:
Q  170 acattcaaaaagtcttgcaatgcactagtgagggtaaattttgatgatccctctttcgcta 230  Q
    ||||||||||||| || ||||||| |||| ||| |||||||| ||||||||||||| ||||    
T  1183793 acattcaaaaagttttccaatgcattagtcaggttaaattttcatgatccctcttttgcta 1183853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 26208004 - 26207961
Alignment:
Q  47 tcacgaagcacatgaaggacagtttcatcctcattcccacaaca 90  Q
    ||||||||||||||||||||||| |||||  |||||||||||||    
T  26208004 tcacgaagcacatgaaggacagtctcatctgcattcccacaaca 26207961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 54812929 - 54813031
Alignment:
Q  13 aatatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatccca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54812929 aatatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcatcattcccacaacatgggcaagtaggagaaatccca 54813028  T
Q  113 aca 115  Q
    |||    
T  54813029 aca 54813031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 46428074 - 46427972
Alignment:
Q  13 aatatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatccca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  46428074 aatatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttaatcatcattcccacaacatgggcaagtcggagaaatccca 46427975  T
Q  113 aca 115  Q
    |||    
T  46427974 aca 46427972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 42794004 - 42793902
Alignment:
Q  13 aatatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatccca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | |||||||||    
T  42794004 aatatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcatcattcccacaacatgggcaagcaagggaaatccca 42793905  T
Q  113 aca 115  Q
    |||    
T  42793904 aca 42793902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 27156853 - 27156939
Alignment:
Q  19 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    |||||||||||| || || |  |||||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||    
T  27156853 aagccatacctgggtagcgtagatgcaatcgcgaagcacatgaagaacagtttcatcttcatttccacaacacgggcaagtaggaga 27156939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 54346247 - 54346161
Alignment:
Q  19 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    |||||||||||| || || || |||||||| |||||||||||||| ||||||||||| ||||| |||||||| |||||| |||||||    
T  54346247 aagccatacctgggtagcgtggatgcaatcgcgaagcacatgaagaacagtttcatcttcatttccacaacacgggcaattaggaga 54346161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 44145237 - 44145135
Alignment:
Q  13 aatatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatccca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||    
T  44145237 aatatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacaatttcatcatcattcccacaacatgggcaagttggagaaatccca 44145138  T
Q  113 aca 115  Q
    |||    
T  44145137 aca 44145135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 26617411 - 26617497
Alignment:
Q  19 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    ||||||||||||||| ||||  |||||| | |||||||||||||| | ||||||||| ||||| |||||||| ||||||||||||||    
T  26617411 aagccatacctgagtagcatagatgcaaccgcgaagcacatgaagaatagtttcatcttcatttccacaacacgggcaagtaggaga 26617497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 24472966 - 24472864
Alignment:
Q  13 aatatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatccca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  24472966 aatatgaagccatacctgagttgcatgaatgcaatcacgaagcacgtgaaggacagtttcatcatcattcccacaacatgggcaagtaggagaaatccaa 24472867  T
Q  113 aca 115  Q
    |||    
T  24472866 aca 24472864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 29214418 - 29214501
Alignment:
Q  22 ccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    |||||||||||| || || ||||||||||||||||||||||| ||||||||||| ||||| ||||||||  |||||||||||||    
T  29214418 ccatacctgagtagcgtggatgcaatcacgaagcacatgaagaacagtttcatcttcatttccacaacacaggcaagtaggaga 29214501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 8020431 - 8020517
Alignment:
Q  19 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    |||||||||||| || || || |||||||| |||||||||||||| ||||||||||| ||||| |||||| | |||||| |||||||    
T  8020431 aagccatacctgggtagcgtggatgcaatcgcgaagcacatgaagaacagtttcatcttcatttccacaatacgggcaattaggaga 8020517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 31047647 - 31047546
Alignment:
Q  14 atatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatcccaa 113  Q
    ||||||||  ||||| ||||| |||||||||||| | | ||||||||||| ||| ||||||| ||||| ||||||||| |  |||| || ||||||||||    
T  31047647 atatgaagttatacccgagttacatgaatgcaattatggagcacatgaagaacaatttcatcatcattaccacaacattgataagtgggtgaaatcccaa 31047548  T
Q  114 ca 115  Q
    ||    
T  31047547 ca 31047546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 38111362 - 38111444
Alignment:
Q  20 agccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtagg 102  Q
    |||||||||||||| || || |  ||||||||||| ||||||| ||| |||||||||||  || ||||||| || ||||||||    
T  38111362 agccatacctgagtagcgtgcacacaatcacgaaggacatgaatgactgtttcatcctctctcgcacaacaaggacaagtagg 38111444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 45753388 - 45753436
Alignment:
Q  42 tgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaaca 90  Q
    |||||||||||||||||||||| |||||||| ||  |||| ||||||||    
T  45753388 tgcaatcacgaagcacatgaagaacagtttcgtcggcatttccacaaca 45753436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 18882898 - 18882796
Alignment:
Q  13 aatatgaagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaatccca 112  Q
    |||||||||||||||||||||||||||||| || |||| |||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||    
T  18882898 aatatgaagccatacctgagttgcatgaatacagtcacaaagcacatgaaggacattttcatcattattcccacaacatgggcaagtaggaaaaatccca 18882799  T
Q  113 aca 115  Q
    |||    
T  18882798 aca 18882796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 14024354 - 14024272
Alignment:
Q  20 agccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtagg 102  Q
    |||||||||||||| || || |  ||||||||||| ||||||| ||| |||||||||||  || ||||||| || ||||||||    
T  14024354 agccatacctgagtagcgtgcacacaatcacgaaggacatgaatgactgtttcatcctctctcgcacaacaaggacaagtagg 14024272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 40197073 - 40197159
Alignment:
Q  19 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    |||||||||| |||||||||| |||||||||| ||||||| |||| ||| ||||||| ||||| |||||||| ||||||||||||||    
T  40197073 aagccatacccgagttgcatggatgcaatcacaaagcacacgaagaacaatttcatcttcatttccacaacacgggcaagtaggaga 40197159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 7305768 - 7305854
Alignment:
Q  19 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    ||||||||||||||| || |  |||||||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||    
T  7305768 aagccatacctgagtagcgtagatgcaatcgcgaagcacgtgaagaacagtttcatcttcatttccacaacacgggcaagtaggaga 7305854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 42161748 - 42161834
Alignment:
Q  22 ccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggagaaat 108  Q
    ||||||||||| ||||||  |||||||||||||||||||||  || || ||||   ||||||||||||| || |||||||| |||||    
T  42161748 ccatacctgagatgcatgcctgcaatcacgaagcacatgaataacggtctcatttgcattcccacaacaaggacaagtaggcgaaat 42161834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 5308154 - 5308068
Alignment:
Q  19 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    |||||||||||| || || || |||||||| |||||||||||||| ||| ||||||| ||||| |||||||| ||||||||||||||    
T  5308154 aagccatacctgggtagcgtggatgcaatcgcgaagcacatgaagaacattttcatcttcatttccacaacacgggcaagtaggaga 5308068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 23949210 - 23949124
Alignment:
Q  19 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    |||||||||||| || || || |||||||| |||||||||||||| ||||||||||| ||||| |||||||| |||||| |||||||    
T  23949210 aagccatacctgggtagcgtggatgcaatcgcgaagcacatgaagaacagtttcatcttcatttccacaacacgggcaattaggaga 23949124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 23085598 - 23085684
Alignment:
Q  19 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    ||||||||||||||| || |  |||||||| |||||||||||||| ||| ||||||| ||||| ||| |||| | ||||||||||||    
T  23085598 aagccatacctgagtagcgtagatgcaatcgcgaagcacatgaagaacaatttcatcttcatttccataacacgtgcaagtaggaga 23085684  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 23722799 - 23722713
Alignment:
Q  19 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    ||||||||| || || || || |||||||| |||||||||||||| ||| ||||||| ||||| |||||||| || |||||||||||    
T  23722799 aagccatacttgggtagcgtggatgcaatcgcgaagcacatgaagaacaatttcatcttcatttccacaacacggacaagtaggaga 23722713  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 36895103 - 36895189
Alignment:
Q  19 aagccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    ||||||||||||||| || |  |||||||| |||||||||||||  ||| ||||||| ||||| |||||||| ||||||||||||||    
T  36895103 aagccatacctgagtagcgtagatgcaatcgcgaagcacatgaaaaacaatttcatcttcatttccacaacacgggcaagtaggaga 36895189  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 34390514 - 34390578
Alignment:
Q  41 atgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtaggaga 105  Q
    |||||||| |||||||||||||| ||||||||||| ||||| ||||||||  |||||||||||||    
T  34390514 atgcaatcgcgaagcacatgaagaacagtttcatcttcatttccacaacacaggcaagtaggaga 34390578  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 1368853 - 1368771
Alignment:
Q  20 agccatacctgagttgcatgaatgcaatcacgaagcacatgaaggacagtttcatcctcattcccacaacatgggcaagtagg 102  Q
    |||||||||||||| || || |  ||||||||||| ||||||| ||| |||||||||||  || ||||||| || ||||||||    
T  1368853 agccatacctgagtagcgtgcacacaatcacgaaggacatgaatgactgtttcatcctctctcgcacaacaaggacaagtagg 1368771  T

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