View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13462_low_7 (Length: 363)

Name: NF13462_low_7
Description: NF13462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13462_low_7
NF13462_low_7
[»] chr2 (8 HSPs)
chr2 (1-343)||(35738135-35738479)
chr2 (1-112)||(29078038-29078151)
chr2 (59-116)||(36889749-36889806)
chr2 (52-119)||(7184877-7184944)
chr2 (54-116)||(36888337-36888399)
chr2 (33-114)||(3607015-3607098)
chr2 (9-115)||(3603504-3603612)
chr2 (52-116)||(43820323-43820387)
[»] chr6 (12 HSPs)
chr6 (33-119)||(14403684-14403770)
chr6 (59-117)||(21611913-21611971)
chr6 (59-116)||(21282816-21282873)
chr6 (52-116)||(29751135-29751199)
chr6 (33-116)||(29465754-29465837)
chr6 (52-115)||(29744781-29744844)
chr6 (65-115)||(5660199-5660249)
chr6 (1-115)||(29467227-29467343)
chr6 (59-113)||(5659106-5659161)
chr6 (5-113)||(17971793-17971903)
chr6 (76-117)||(21283922-21283963)
chr6 (65-117)||(12260444-12260496)
[»] chr7 (8 HSPs)
chr7 (59-120)||(21709153-21709214)
chr7 (59-114)||(26024888-26024943)
chr7 (33-115)||(40738193-40738275)
chr7 (33-115)||(45088228-45088310)
chr7 (8-113)||(19543492-19543599)
chr7 (59-119)||(21710603-21710663)
chr7 (33-113)||(45087067-45087147)
chr7 (59-115)||(26025868-26025924)
[»] chr5 (3 HSPs)
chr5 (1-123)||(37966806-37966930)
chr5 (33-122)||(19718866-19718955)
chr5 (1-94)||(5152886-5152980)
[»] chr4 (15 HSPs)
chr4 (59-116)||(756486-756543)
chr4 (59-115)||(702652-702708)
chr4 (59-115)||(770951-771007)
chr4 (59-123)||(16038267-16038331)
chr4 (59-115)||(35060455-35060511)
chr4 (52-122)||(36220595-36220665)
chr4 (59-116)||(35055332-35055389)
chr4 (59-115)||(701633-701689)
chr4 (59-115)||(769932-769988)
chr4 (59-118)||(757501-757560)
chr4 (52-119)||(51645966-51646033)
chr4 (52-115)||(11038577-11038640)
chr4 (1-114)||(36219408-36219522)
chr4 (59-113)||(16039680-16039734)
chr4 (65-123)||(40681509-40681567)
[»] chr3 (10 HSPs)
chr3 (33-118)||(20184445-20184530)
chr3 (59-114)||(21815909-21815964)
chr3 (52-117)||(27688484-27688549)
chr3 (59-119)||(21817402-21817462)
chr3 (59-118)||(14859135-14859194)
chr3 (59-117)||(27695577-27695635)
chr3 (52-120)||(39991500-39991568)
chr3 (59-117)||(39992496-39992554)
chr3 (65-117)||(32304230-32304282)
chr3 (52-120)||(45940675-45940743)
[»] chr8 (12 HSPs)
chr8 (59-119)||(39567059-39567119)
chr8 (52-119)||(9311017-9311084)
chr8 (59-113)||(44633776-44633830)
chr8 (60-115)||(14816570-14816625)
chr8 (60-115)||(14829115-14829170)
chr8 (59-114)||(45378550-45378605)
chr8 (59-116)||(39270796-39270853)
chr8 (59-113)||(39568510-39568564)
chr8 (52-117)||(9312171-9312236)
chr8 (65-115)||(45377427-45377477)
chr8 (78-118)||(14819391-14819431)
chr8 (65-117)||(44632704-44632756)
[»] scaffold0029 (2 HSPs)
scaffold0029 (52-115)||(71824-71887)
scaffold0029 (52-116)||(70668-70732)
[»] scaffold0031 (3 HSPs)
scaffold0031 (59-119)||(123420-123480)
scaffold0031 (59-119)||(134296-134356)
scaffold0031 (59-116)||(129421-129478)
[»] chr1 (12 HSPs)
chr1 (36-120)||(6241248-6241332)
chr1 (59-115)||(51597961-51598017)
chr1 (67-115)||(51599443-51599491)
chr1 (65-115)||(16963434-16963484)
chr1 (33-116)||(6242673-6242756)
chr1 (65-116)||(16962009-16962060)
chr1 (52-115)||(46015852-46015915)
chr1 (59-114)||(50682589-50682644)
chr1 (52-117)||(33332175-33332240)
chr1 (59-112)||(33333414-33333467)
chr1 (52-117)||(46014699-46014764)
chr1 (52-116)||(15073922-15073986)
[»] scaffold0394 (1 HSPs)
scaffold0394 (52-118)||(14267-14334)
[»] scaffold0194 (1 HSPs)
scaffold0194 (52-116)||(19240-19304)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 35738479 - 35738135
Alignment:
Q  1 aaatgaccaaaatgtgtaacaaagataaagttaa--taccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacg 98  Q
    ||||||||||||| ||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35738479 aaatgaccaaaatatgtaacaaagataaagttaaaataccaaaatggatcaaattttagatatggaaccaaagcgataccaaaaaattagttaaggaacg 35738380  T
Q  99 aaaatagcaattaagcctaaatattatcaattataacatactgcctgtgtcccggnnnnnnncttagaaacaaacccttttttaaggagcttagaaccaa 198  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  35738379 aaaatagtaattaagcctaaatattatcaattataacatactgcctgtgtcccggtttttttcttagaaacaaacccttttttaaggagcttagaaccaa 35738280  T
Q  199 acctaggaattcaaatgtatataatgaatcttgagctaagttttaggttaagaaactcacaagtgaattactaaaaatataccaaaaattaagaaacaaa 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35738279 acctaggaattcaaatgtatataatgaatcttgagctaagttttaggttaagaaacacacaagtgaattactaaaaatataccaaaaattaagaaacaaa 35738180  T
Q  299 agatgtaacggtaatgtctactgcaacaaaatctgatatagatac 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35738179 agatgtaacggtaatgtctactgcaacaaaatctgatatagatac 35738135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 29078038 - 29078151
Alignment:
Q  1 aaatgaccaaaatgtgtaacaaagataaagtt--aataccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacg 98  Q
    ||||||||||||||||||||| ||||||| ||  |||||||||||||| |||||||||  ||| | |||||| |||||  ||  || ||||  ||| |||    
T  29078038 aaatgaccaaaatgtgtaacagagataaacttaaaataccaaaacggaacaaattttaattattggaccaaaacgatattaattaaatagttgagggacg 29078137  T
Q  99 aaaatagcaattaa 112  Q
    ||||||||||||||    
T  29078138 aaaatagcaattaa 29078151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 36889749 - 36889806
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    ||||| |||||| |||||||||||||||||| |||| || ||||||||||||||||||    
T  36889749 tatgggaccaaaccgataccaaaaaattagttaagggactaaaatagcaattaagcct 36889806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 7184944 - 7184877
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaa 119  Q
    |||||| ||||| | |||| |||||||||||||||||| |||  || |||||||||||||||||||||    
T  7184944 ttttagttatgggatcaaaccgataccaaaaaattagttaagagactaaaatagcaattaagcctaaa 7184877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 36888399 - 36888337
Alignment:
Q  54 ttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    |||| ||||| |||||| |||||||||||||||||  |||| || ||||||||||||||||||    
T  36888399 ttagttatgggaccaaaccgataccaaaaaattagctaagggactaaaatagcaattaagcct 36888337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 3607015 - 3607098
Alignment:
Q  33 aataccaaaacggatcaaattttagatatggaaccaaagcgataccaa--aaaattagtgaaggaacgaaaatagcaattaagc 114  Q
    |||| |||||||||  ||||||||  || |||| ||||||||||| ||  ||||||| | ||||||||||||||||||||||||    
T  3607015 aatatcaaaacggaataaattttaattaaggaatcaaagcgatactaattaaaattaattaaggaacgaaaatagcaattaagc 3607098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 3603612 - 3603504
Alignment:
Q  9 aaaatgtgtaacaaagataaagttaa--taccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagc 106  Q
    ||||| ||||||| ||||||| ||||  |||||||||  | |||||||||   | || ||||||||||||| ||| || |||| |||| ||||||||| |    
T  3603612 aaaatatgtaacagagataaacttaaaataccaaaacataacaaattttaatcaagggaccaaagcgatactaaataaatagttaagggacgaaaataac 3603513  T
Q  107 aattaagcc 115  Q
    |||||||||    
T  3603512 aattaagcc 3603504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 43820323 - 43820387
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    |||||| || || ||||||||||||||||  || |||| ||||||| ||||||||| ||||||||    
T  43820323 ttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaatagcatttaagcct 43820387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 14403770 - 14403684
Alignment:
Q  33 aataccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaa 119  Q
    |||||||||| ||| |||||||||| ||||| ||||||| |||||||| |||||||  |||| || |||||||||||||||||||||    
T  14403770 aataccaaaatggaccaaattttagttatgggaccaaagtgataccaacaaattaggtaagggactaaaatagcaattaagcctaaa 14403684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 21611971 - 21611913
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagccta 117  Q
    ||||| |||||| |||||||||||||||||| |||| ||||||||||||||||||||||    
T  21611971 tatgggaccaaatcgataccaaaaaattagttaagggacgaaaatagcaattaagccta 21611913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 21282873 - 21282816
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    ||||| ||||||||||||| ||||||||| | |||| |||||||||||||||||||||    
T  21282873 tatgggaccaaagcgatacaaaaaaattaattaagggacgaaaatagcaattaagcct 21282816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 29751135 - 29751199
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    |||||| ||||| |||||| |||||||||| ||||||| |||| || ||||||||||||||||||    
T  29751135 ttttagttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcct 29751199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 29465837 - 29465754
Alignment:
Q  33 aataccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    |||||||||||||| |||||||||  || ||  |||||| ||||| ||  ||||||| |||| |||||||||||||||||||||    
T  29465837 aataccaaaacggaacaaattttaattaaggggccaaagtgatactaattaattagttaagggacgaaaatagcaattaagcct 29465754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 29744844 - 29744781
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    |||||| ||||| |||||| |||||||||| ||||||| |||| || |||||||||||||||||    
T  29744844 ttttagttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagcc 29744781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 5660199 - 5660249
Alignment:
Q  65 accaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    |||||| ||||||||||||||||||  ||| ||||||||||||||||||||    
T  5660199 accaaaacgataccaaaaaattagtttagggacgaaaatagcaattaagcc 5660249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 29467227 - 29467343
Alignment:
Q  1 aaatgaccaaaatgtgtaacaaagataaagttaa--taccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacg 98  Q
    ||||||| ||||| ||||||| ||||||| ||||  || | ||||||| |||||||||  ||  | |||||||| |||| ||| || |||| |||| |||    
T  29467227 aaatgactaaaatatgtaacagagataaacttaaaatatctaaacggaacaaattttaattaaaggaccaaagcaatactaaataaatagttaagggacg 29467326  T
Q  99 aaaatagcaattaagcc 115  Q
    |||||||||||||||||    
T  29467327 aaaatagcaattaagcc 29467343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 5659161 - 5659106
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacg-aaaatagcaattaag 113  Q
    ||||| ||||||| ||||||||||||||||| |||| ||| |||||||||||||||    
T  5659161 tatgggaccaaagtgataccaaaaaattagttaagggacgaaaaatagcaattaag 5659106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 17971793 - 17971903
Alignment:
Q  5 gaccaaaatgtgtaacaaagataaagttaa--taccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaa 102  Q
    |||||||||||| |||  ||||||| ||||  |||||||| ||| ||||||| |  || || ||||||||||||| |  ||| |||| ||||||||||||    
T  17971793 gaccaaaatgtgcaacggagataaacttaaaataccaaaatggaacaaatttgaattaagggaccaaagcgatactactaaaatagttaaggaacgaaaa 17971892  T
Q  103 tagcaattaag 113  Q
    || ||||||||    
T  17971893 tatcaattaag 17971903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 21283922 - 21283963
Alignment:
Q  76 accaaaaaattagtgaaggaacgaaaatagcaattaagccta 117  Q
    |||||||||||||| |||| ||||||||| ||||||||||||    
T  21283922 accaaaaaattagttaagggacgaaaataacaattaagccta 21283963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 12260496 - 12260444
Alignment:
Q  65 accaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagccta 117  Q
    ||||||||||||||||| ||| | | |||| ||||||| ||||||||||||||    
T  12260496 accaaagcgataccaaataataacttaagggacgaaaagagcaattaagccta 12260444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 21709214 - 21709153
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaat 120  Q
    ||||| ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  21709214 tatgggaccaaagcgatactaaaaaattagttaagggacgaaaatagcaattaagcctaaat 21709153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 26024943 - 26024888
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagc 114  Q
    ||||| ||||||||||||||||||||| ||| |||| ||||| |||||||||||||    
T  26024943 tatgggaccaaagcgataccaaaaaataagttaagggacgaagatagcaattaagc 26024888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 40738275 - 40738193
Alignment:
Q  33 aataccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    ||||||||||| || |||||||||  || || ||||||||||||| ||  |||||||  ||| ||||||||||||||||||||    
T  40738275 aataccaaaacagaacaaattttaattaagggaccaaagcgatactaattaattagttgagggacgaaaatagcaattaagcc 40738193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 45088228 - 45088310
Alignment:
Q  33 aataccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    |||||||||||||| |   |||||| ||||| ||||||  ||||||||| ||||||| |||| || |||||||||||||||||    
T  45088228 aataccaaaacggacctttttttagttatgggaccaaactgataccaaacaattagttaagggactaaaatagcaattaagcc 45088310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 19543599 - 19543492
Alignment:
Q  8 caaaatgtgtaacaaagataaagttaa--taccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatag 105  Q
    |||||| ||||||| ||||||| ||||  || |||||||||  ||||||||  || || | ||||||||||| ||| || |||| |||| ||||||||||    
T  19543599 caaaatatgtaacagagataaacttaaaatatcaaaacggaataaattttaattaagggatcaaagcgatactaaataaatagttaagggacgaaaatag 19543500  T
Q  106 caattaag 113  Q
    ||||||||    
T  19543499 caattaag 19543492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 21710603 - 21710663
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaa 119  Q
    ||||| ||||||||||||||||||||| ||| |||| || |||||| ||||| ||||||||    
T  21710603 tatgggaccaaagcgataccaaaaaataagttaagggacaaaaatatcaattcagcctaaa 21710663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 45087147 - 45087067
Alignment:
Q  33 aataccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaag 113  Q
    |||||||||||||| |   |||||| ||||| |||||| |||||||||||||||||| || | || |||||| ||||||||    
T  45087147 aataccaaaacggacctttttttagttatgggaccaaaccgataccaaaaaattagttaaaggactaaaataacaattaag 45087067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 26025868 - 26025924
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    ||||||| |||||| ||||||| |||||||| || | || |||||||||||||||||    
T  26025868 tatggaatcaaagcaataccaagaaattagttaaaggacaaaaatagcaattaagcc 26025924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 37966930 - 37966806
Alignment:
Q  1 aaatgaccaaaatgtgtaacaaagataaagttaa--taccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacg 98  Q
    ||||||||||||| ||||||  ||||||| ||||  |||||||||||| |||||||||  ||||| |||||||  |||| ||  || |||| |||| |||    
T  37966930 aaatgaccaaaatatgtaaccgagataaatttaaaataccaaaacggaacaaattttaattatgggaccaaagtaatactaattaaatagttaagggacg 37966831  T
Q  99 aaaatagcaattaagcctaaatatt 123  Q
    |||||| ||||||||||||||||||    
T  37966830 aaaataacaattaagcctaaatatt 37966806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 19718866 - 19718955
Alignment:
Q  33 aataccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaatat 122  Q
    |||||||||||||||    |||||| ||| | | ||||||||||||||||||||||| || | || ||||||||||||||||||||||||    
T  19718866 aataccaaaacggatttttttttagttataggatcaaagcgataccaaaaaattagttaaaggactaaaatagcaattaagcctaaatat 19718955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 5152886 - 5152980
Alignment:
Q  1 aaatgaccaaaatgtgtaacaaagataaagtta-ataccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaagg 94  Q
    ||||||||||||||||||||||||| ||| | | |||||||||   |||||||||||  || || ||||||||||||| ||| || |||| ||||    
T  5152886 aaatgaccaaaatgtgtaacaaagagaaattaagataccaaaataaatcaaattttaattaagggaccaaagcgatactaaataaatagttaagg 5152980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 756543 - 756486
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    ||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  756543 tatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcct 756486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 702652 - 702708
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  702652 tatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 702708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 770951 - 771007
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  770951 tatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 771007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 16038331 - 16038267
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaatatt 123  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||    
T  16038331 tatgggaccaaagcgataccaaaaaattagttaagggacgaaaataacaattaagcctaattatt 16038267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 35060455 - 35060511
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  35060455 tatgggaccaaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 35060511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 36220595 - 36220665
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaatat 122  Q
    |||||| ||||| |||||| |||||||||||||||||| |||| || ||||||||||||||||||| ||||    
T  36220595 ttttagttatgggaccaaaacgataccaaaaaattagttaaggtactaaaatagcaattaagcctatatat 36220665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 35055389 - 35055332
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||||    
T  35055389 tatgggaccaaagcgataccaaaaaattagttaagggacgaaaataacaattaagcct 35055332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 701689 - 701633
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    ||||| ||||||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  701689 tatgggaccaaagcgataccaaaaaataagttaagggacgaaaatagcaattaagcc 701633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 769988 - 769932
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    ||||| ||||||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  769988 tatgggaccaaagcgataccaaaaaataagttaagggacgaaaatagcaattaagcc 769932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 757501 - 757560
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaa 118  Q
    ||||| ||||||||||||||||||||| ||| |||| | |||||||||||||||||||||    
T  757501 tatgggaccaaagcgataccaaaaaataagttaagggatgaaaatagcaattaagcctaa 757560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 51645966 - 51646033
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaa 119  Q
    |||||| ||||| |||||| |||||||||||||||||  |||| || |||||||||||||||||||||    
T  51645966 ttttagttatgggaccaaaccgataccaaaaaattagctaagggactaaaatagcaattaagcctaaa 51646033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 11038640 - 11038577
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    |||||| ||||| |||||||| |||||||||||||||  |||| || |||||||||||||||||    
T  11038640 ttttagttatgggaccaaagcaataccaaaaaattagctaagggactaaaatagcaattaagcc 11038577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 36219522 - 36219408
Alignment:
Q  1 aaatgaccaaaatgtgtaacaaagataaagttaa--taccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacg 98  Q
    ||||||||||||| ||||||  ||||||| ||||  ||| |||||||| |   |||||| ||||| |||||| ||||||  |||||||||| |||| ||     
T  36219522 aaatgaccaaaatatgtaacggagataaacttaaaatactaaaacgga-ctttttttagttatgggaccaaaccgatactcaaaaattagttaagggact 36219424  T
Q  99 aaaatagcaattaagc 114  Q
    ||||||||||||||||    
T  36219423 aaaatagcaattaagc 36219408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 16039680 - 16039734
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaag 113  Q
    ||||| ||| || |||||||||||||||||| |||| || |||||||||||||||    
T  16039680 tatgggaccgaaacgataccaaaaaattagttaagggacaaaaatagcaattaag 16039734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 40681509 - 40681567
Alignment:
Q  65 accaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaatatt 123  Q
    ||||||||||||||||| ||| | | |||| ||||||| ||||||||||||||| ||||    
T  40681509 accaaagcgataccaaataataacttaagggacgaaaagagcaattaagcctaattatt 40681567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 20184530 - 20184445
Alignment:
Q  33 aataccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaa 118  Q
    |||||||||||||||  | |||||| ||||| |||||| |||||||||||||||||| |||| || |||||| |||||||||||||    
T  20184530 aataccaaaacggatttatttttagttatgggaccaaaccgataccaaaaaattagttaagggactaaaataacaattaagcctaa 20184445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 21815964 - 21815909
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagc 114  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  21815964 tatggaaccaaagcgatactaaaaaattagttaagggacgaaaatagcaattaagc 21815909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 27688549 - 27688484
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagccta 117  Q
    |||||| ||||| |||||| |||||||||| ||||||| |||| || |||||||||||||||||||    
T  27688549 ttttagttatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagccta 27688484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 21817402 - 21817462
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaa 119  Q
    ||||| ||||||||||||||||||||||||| |||| | |||||||| |||||||| ||||    
T  21817402 tatgggaccaaagcgataccaaaaaattagttaagggatgaaaatagtaattaagcttaaa 21817462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 14859135 - 14859194
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaa 118  Q
    ||||||||||||||||||| |||||| || | |||| | |||||||||||||||||||||    
T  14859135 tatggaaccaaagcgatactaaaaaaatatttaagggaagaaaatagcaattaagcctaa 14859194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 27695577 - 27695635
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagccta 117  Q
    ||||| |||||| |||||||||| ||||||| |||| || |||||||||||||||||||    
T  27695577 tatgggaccaaaccgataccaaataattagttaagggactaaaatagcaattaagccta 27695635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 39991568 - 39991500
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaat 120  Q
    |||||| ||||| | |||| ||||| |||||||||||| ||||||| |||||| |||||||| ||||||    
T  39991568 ttttagttatgggatcaaaacgatatcaaaaaattagttaaggaactaaaataacaattaagtctaaat 39991500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 39992496 - 39992554
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagccta 117  Q
    ||||| || |||| ||||||||||||||||| |||| || ||||||| |||||||||||    
T  39992496 tatgggacaaaagtgataccaaaaaattagttaagggactaaaatagtaattaagccta 39992554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 32304282 - 32304230
Alignment:
Q  65 accaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagccta 117  Q
    ||||||||||||||||| ||| | | |||| ||||||| ||||||||||||||    
T  32304282 accaaagcgataccaaataataacttaagggacgaaaagagcaattaagccta 32304230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 45940675 - 45940743
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaat 120  Q
    |||||| || || ||||||||||||||||  || |||| |||| || ||||||||| ||||||||||||    
T  45940675 ttttagttaagggaccaaagcgataccaattaaatagttaagggaccaaaatagcatttaagcctaaat 45940743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 39567119 - 39567059
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaa 119  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  39567119 tatgggaccaaagcgataccaaaaaattagttaagggacgaaaataacaattaagcctaaa 39567059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 9311084 - 9311017
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaa 119  Q
    |||||| ||||| ||||||||||||||||||||||||  |||| || |||||||||||||||||||||    
T  9311084 ttttagttatgggaccaaagcgataccaaaaaattagataagggactaaaatagcaattaagcctaaa 9311017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 44633776 - 44633830
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaag 113  Q
    ||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  44633776 tatgggaccaaagcgataccaaaaaattagttaaggaaccaaaatagcaattaag 44633830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 14816625 - 14816570
Alignment:
Q  60 atggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    |||| ||||||||||||||||||||||||| |||| || |||||||||||||||||    
T  14816625 atgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaattaagcc 14816570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 14829115 - 14829170
Alignment:
Q  60 atggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    |||| ||||||||||||||||||||||||| |||| || |||||||||||||||||    
T  14829115 atgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaattaagcc 14829170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 45378550 - 45378605
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagc 114  Q
    ||||| ||||||||||||||||||||||| | |||| |||||||||||||||||||    
T  45378550 tatgggaccaaagcgataccaaaaaattatttaagggacgaaaatagcaattaagc 45378605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 39270796 - 39270853
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    ||||| |||||| |||||||||||||| ||| |||| |||||||||||||||||||||    
T  39270796 tatgggaccaaaacgataccaaaaaataagttaagggacgaaaatagcaattaagcct 39270853  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 39568510 - 39568564
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaag 113  Q
    |||||||||||| |||||| ||||||||||| |||| || |||||||||||||||    
T  39568510 tatggaaccaaaacgatactaaaaaattagttaagggacaaaaatagcaattaag 39568564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 9312171 - 9312236
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagccta 117  Q
    |||||| ||||| | ||||||||||||||||||||||| || | || |||||||||||||| ||||    
T  9312171 ttttagttatgggatcaaagcgataccaaaaaattagttaaaggactaaaatagcaattaaaccta 9312236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 45377477 - 45377427
Alignment:
Q  65 accaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    ||||||||||||||||||||| | | |||| ||||||||| ||||||||||    
T  45377477 accaaagcgataccaaaaaatcaattaagggacgaaaataacaattaagcc 45377427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 14819391 - 14819431
Alignment:
Q  78 caaaaaattagtgaaggaacgaaaatagcaattaagcctaa 118  Q
    |||||||||||| |||| || ||||||||||||||||||||    
T  14819391 caaaaaattagttaagggactaaaatagcaattaagcctaa 14819431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 44632756 - 44632704
Alignment:
Q  65 accaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagccta 117  Q
    |||||| |||||||||||||||| | |||  ||||||||||||||||| ||||    
T  44632756 accaaaacgataccaaaaaattaattaagagacgaaaatagcaattaaaccta 44632704  T

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Target: scaffold0029 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 71824 - 71887
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    |||||| ||||| ||||||||||||||||||||||||| |||| || |||||||||||||||||    
T  71824 ttttagttatgggaccaaagcgataccaaaaaattagttaagggactaaaatagcaattaagcc 71887  T

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Target: scaffold0029; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 70732 - 70668
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    |||||| ||||| |||||| |||||||||||||||||| |||| || ||||||||||||||||||    
T  70732 ttttagttatgggaccaaaccgataccaaaaaattagttaagggactaaaatagcaattaagcct 70668  T

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Target: scaffold0031 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 123480 - 123420
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaa 119  Q
    ||||| |||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||    
T  123480 tatgggaccaaagcaataccaagaaattagttaagggacgaaaatagcaattaagcctaaa 123420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 134356 - 134296
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaa 119  Q
    ||||| |||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||    
T  134356 tatgggaccaaagcaataccaagaaattagttaagggacgaaaatagcaattaagcctaaa 134296  T

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Target: scaffold0031; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 129421 - 129478
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    ||||| ||||||| ||||||||||||| ||| |||| ||||||||| |||||||||||    
T  129421 tatgggaccaaagtgataccaaaaaataagttaagggacgaaaataacaattaagcct 129478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 6241332 - 6241248
Alignment:
Q  36 accaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcctaaat 120  Q
    |||||||||||  ||||||||  || || ||||||||||||| ||| || |||| ||||||||||||||| ||||||||||||||    
T  6241332 accaaaacggaataaattttaattaagggaccaaagcgatactaaataaatagttaaggaacgaaaatagaaattaagcctaaat 6241248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 51598017 - 51597961
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    ||||| ||||||||||||||||||||| ||| |||| ||||||||||||||||||||    
T  51598017 tatgggaccaaagcgataccaaaaaataagttaagggacgaaaatagcaattaagcc 51597961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 51599443 - 51599491
Alignment:
Q  67 caaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  51599443 caaagcgataccaaaaaattagttaagggacgaaaatagcaattaagcc 51599491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 16963434 - 16963484
Alignment:
Q  65 accaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    |||||| |||||||||||||||||| |||||||||||||| ||||||||||    
T  16963434 accaaatcgataccaaaaaattagttaaggaacgaaaataacaattaagcc 16963484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 116
Target Start/End: Original strand, 6242673 - 6242756
Alignment:
Q  33 aataccaaaacggatcaaattttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    |||||||||||||| |||||||||  || || ||||||||||||| ||  ||||||| |||| | ||||||| |||||||||||    
T  6242673 aataccaaaacggaacaaattttaattaagggaccaaagcgatactaattaattagttaagggatgaaaatatcaattaagcct 6242756  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 16962060 - 16962009
Alignment:
Q  65 accaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    |||||||| |||||||||||||||| |||| || ||||||||||||||||||    
T  16962060 accaaagcaataccaaaaaattagttaagggacaaaaatagcaattaagcct 16962009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 46015852 - 46015915
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcc 115  Q
    |||||| ||||| ||||||||||||||||||||||| | |||| || |||||| ||||||||||    
T  46015852 ttttagttatgggaccaaagcgataccaaaaaattacttaagggactaaaataacaattaagcc 46015915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 50682589 - 50682644
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagc 114  Q
    ||||| |||||||||||||||||||| || | |||| || ||||||||||||||||    
T  50682589 tatgggaccaaagcgataccaaaaaaataattaagggaccaaaatagcaattaagc 50682644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 33332240 - 33332175
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagccta 117  Q
    |||||| ||||| |||||| |||||||||| || |||| |||  || |||||||||||||||||||    
T  33332240 ttttagttatgggaccaaaccgataccaaacaactagttaagagactaaaatagcaattaagccta 33332175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 33333414 - 33333467
Alignment:
Q  59 tatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaa 112  Q
    ||||| ||||||  ||||||||||||||||| |||| || ||||||||||||||    
T  33333414 tatgggaccaaactgataccaaaaaattagttaagggactaaaatagcaattaa 33333467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 46014764 - 46014699
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagccta 117  Q
    |||||| ||||| | | ||||||||||||||||||||| ||   || |||||||||||||||||||    
T  46014764 ttttagttatgggatcgaagcgataccaaaaaattagttaaatgactaaaatagcaattaagccta 46014699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 15073922 - 15073986
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    |||||| || || ||||||||||||||||  || |||| ||||||| ||||||||| ||||||||    
T  15073922 ttttagttaagggaccaaagcgataccaattaaatagttaaggaaccaaaatagcatttaagcct 15073986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 14334 - 14267
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaa-ttagtgaaggaacgaaaatagcaattaagcctaa 118  Q
    |||||| ||||| |||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||    
T  14334 ttttagttatgggaccaaaccgataccaaaaaaattagttaagggactaaaatagcaattaagcctaa 14267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 19240 - 19304
Alignment:
Q  52 ttttagatatggaaccaaagcgataccaaaaaattagtgaaggaacgaaaatagcaattaagcct 116  Q
    |||||| ||||| |||||| ||||| |||||||||||| ||||||| ||| || |||||||||||    
T  19240 ttttagttatgggaccaaaccgatatcaaaaaattagttaaggaactaaagtaacaattaagcct 19304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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